Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LKV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 -1.192 -0.109 0.001
2 C5 C C2 S N N 0 -3.4 -1.138 -0.082
3 C7 C C3 N N N 0 -4.812 -0.611 -0.113
4 C8 C C4 N N N 0 2.043 0.081 1.521
5 C10 C C5 N Y N 0 4.531 -0.817 1.401
6 C12 C C6 N Y N 0 5.383 -1.102 -0.824
7 C13 C C7 N Y N 0 4.185 -0.663 -1.35
8 C15 C C8 N N N 0 1.778 0.2 -0.747
9 C1 C C9 N N N 0 -0.384 2.225 -0.216
10 O3 O O1 N N N 0 1.299 0.385 -1.848
11 C14 C C10 N Y N 0 3.145 -0.296 -0.494
12 C11 C C11 N Y N 0 5.558 -1.18 0.546
13 C9 C C12 N Y N 0 3.333 -0.378 0.888
14 N1 N N1 N N N 0 1.14 0.419 0.416
15 C3 C C13 S N N 0 -0.233 0.912 0.555
16 C2 C C14 N N N 0 -1.783 2.796 0.019
17 C C C15 N N N 0 0.664 3.227 0.273
18 O O O2 N N N 0 -0.795 -0.964 -0.761
19 N N N2 N N N 0 -2.492 -0.075 0.357
20 C6 C C16 N N N 0 -3.316 -2.316 0.89
21 O1 O O3 N N N 0 -5.036 0.534 0.201
22 O2 O O4 N N N 0 -5.819 -1.415 -0.488
23 H1 H H1 N N N 0 -3.114 -1.47 -1.081
24 H14 H H2 N N N 0 1.615 -0.721 2.123
25 H15 H H3 N N N 0 2.223 0.96 2.141
26 H16 H H4 N N N 0 4.67 -0.878 2.47
27 H18 H H5 N N N 0 6.188 -1.388 -1.486
28 H19 H H6 N N N 0 4.052 -0.604 -2.42
29 H5 H H7 N N N 0 -0.241 2.04 -1.28
30 H17 H H8 N N N 0 6.499 -1.524 0.95
31 H H H9 N N N 0 -0.452 1.082 1.61
32 H7 H H10 N N N 0 -1.947 2.93 1.088
33 H6 H H11 N N N 0 -1.872 3.758 -0.485
34 H8 H H12 N N N 0 -2.528 2.107 -0.379
35 H4 H H13 N N N 0 0.581 3.342 1.354
36 H3 H H14 N N N 0 1.661 2.862 0.022
37 H2 H H15 N N N 0 0.498 4.19 -0.209
38 H9 H H16 N N N 0 -2.826 0.652 0.905
39 H12 H H17 N N N 0 -2.294 -2.696 0.912
40 H11 H H18 N N N 0 -3.601 -1.984 1.888
41 H10 H H19 N N N 0 -3.991 -3.106 0.563
42 H13 H H20 N N N 0 -6.707 -1.032 -0.492