Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KDN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 S N N 0 -1.565 0.823 -0.231
2 C1 C C10 N N N 0 -2.0 2.155 0.322
3 C3 C C2 N N N 0 -2.512 -0.271 0.268
4 C4 C C3 S N N 0 -2.029 -1.63 -0.25
5 C5 C C4 R N N 0 -0.585 -1.855 0.211
6 C6 C C5 R N N 0 0.287 -0.7 -0.286
7 C7 C C6 R N N 0 1.719 -0.887 0.221
8 C8 C C7 R N N 0 2.561 0.329 -0.17
9 C9 C C9 N N N 0 3.993 0.142 0.337
10 O5 O O4 N N N 0 -0.099 -3.087 -0.327
11 O1A O O9 N N N 0 -1.218 2.836 0.944
12 O1B O O8 N N N 0 -3.256 2.586 0.125
13 O4 O O3 N N N 0 -2.864 -2.665 0.272
14 O6 O O5 N N N 0 -0.235 0.536 0.206
15 O7 O O6 N N N 0 1.707 -1.02 1.643
16 O8 O O7 N N N 0 2.573 0.462 -1.593
17 O9 O O10 N N N 0 4.749 1.325 0.074
18 O2 O O1 N N Y 0 -1.598 0.866 -1.659
19 H31 H H21C N N N 0 -2.518 -0.278 1.358
20 H32 H H22C N N N 0 -3.519 -0.078 -0.101
21 HO2 H H1 N N Y 0 -1.02 1.538 -2.046
22 H4 H H3 N N N 0 -2.07 -1.64 -1.339
23 H5 H H4 N N N 0 -0.553 -1.894 1.3
24 HO4 H HA N N Y 0 -3.795 -2.581 0.024
25 H6 H H5 N N N 0 0.287 -0.687 -1.376
26 HO5 H HB N N Y 0 -0.609 -3.862 -0.056
27 H7 H H6 N N N 0 2.148 -1.785 -0.225
28 H8 H H7 N N N 0 2.132 1.227 0.275
29 HO7 H HC N N Y 0 1.337 -0.256 2.107
30 HO8 H HD N N Y 0 2.943 -0.302 -2.057
31 H91 H H91C N N N 0 3.976 -0.048 1.41
32 H92 H H92C N N N 0 4.452 -0.704 -0.175
33 HO1B H H8 N N N 0 -3.488 3.447 0.5
34 HO9 H H10 N N Y 0 5.669 1.278 0.37