Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : KDC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -3.257 -0.025 -0.107
2 C2 C C2 N Y N 0 -4.632 0.162 -0.272
3 C3 C C3 N Y N 0 -2.724 -0.197 1.175
4 N4 N N1 N Y N 0 -2.187 -0.083 -0.984
5 C5 C C4 N Y N 0 -5.477 0.178 0.841
6 S6 S S1 N Y N 0 -5.621 0.404 -1.71
7 N7 N N2 N Y N 0 -1.381 -0.355 1.033
8 C8 C C5 N Y N 0 -3.579 -0.18 2.286
9 C9 C C6 N Y N 0 -1.062 -0.289 -0.236
10 C10 C C7 N Y N 0 -4.914 0.002 2.126
11 N11 N N3 N Y N 0 -6.763 0.369 0.49
12 C12 C C8 N Y N 0 -7.03 0.504 -0.753
13 S13 S S2 N N N 0 0.571 -0.438 -0.881
14 C14 C C9 N N N 0 1.493 -0.688 0.656
15 C15 C C10 N Y N 0 2.959 -0.845 0.342
16 C16 C C11 N Y N 0 3.77 0.27 0.304
17 N17 N N4 N Y N 0 3.451 -2.048 0.113
18 C18 C C12 N Y N 0 5.123 0.113 0.013
19 C19 C C13 N Y N 0 4.727 -2.237 -0.166
20 C20 C C14 N Y N 0 5.602 -1.172 -0.228
21 O21 O O1 N N N 0 5.954 1.186 -0.034
22 C22 C C15 N N N 0 7.058 -1.397 -0.547
23 C23 C C16 N N N 0 5.376 2.467 0.226
24 C24 C C17 N N N 0 6.457 3.544 0.128
25 H1 H H1 N N N 0 -2.228 0.006 -1.949
26 H3 H H3 N N N 0 -3.171 -0.312 3.277
27 H4 H H4 N N N 0 -5.556 0.012 2.994
28 H5 H H5 N N N 0 -8.023 0.662 -1.148
29 H6 H H6 N N N 0 1.352 0.173 1.309
30 H7 H H7 N N N 0 1.131 -1.587 1.156
31 H8 H H8 N N N 0 3.362 1.251 0.496
32 H9 H H9 N N N 0 5.091 -3.237 -0.347
33 H10 H H10 N N N 0 7.611 -1.564 0.377
34 H11 H H11 N N N 0 7.158 -2.27 -1.192
35 H12 H H12 N N N 0 7.458 -0.521 -1.056
36 H13 H H13 N N N 0 4.595 2.668 -0.508
37 H14 H H14 N N N 0 4.944 2.474 1.227
38 H15 H H15 N N N 0 6.016 4.521 0.326
39 H16 H H16 N N N 0 7.238 3.343 0.861
40 H17 H H17 N N N 0 6.888 3.537 -0.873