Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KB9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N N N 0 1.843 2.386 -0.163
2 C03 C C2 N N N 0 1.775 3.848 0.195
3 C04 C C3 N N N 0 3.181 4.45 0.151
4 C05 C C4 N N N 0 3.112 5.935 0.515
5 C06 C C5 N Y N 0 0.622 1.583 -0.192
6 C07 C C6 N Y N 0 -0.632 2.042 0.078
7 C08 C C7 N Y N 0 -1.526 0.954 -0.06
8 C09 C C8 N Y N 0 -2.912 0.826 0.089
9 C10 C C9 N Y N 0 -3.51 -0.406 -0.122
10 C11 C C10 N Y N 0 -4.978 -0.552 0.034
11 C12 C C11 N Y N 0 -5.775 0.541 0.387
12 C13 C C12 N Y N 0 -7.136 0.361 0.522
13 C15 C C13 N Y N 0 -6.971 -1.877 -0.017
14 C16 C C14 N Y N 0 -5.603 -1.786 -0.173
15 C17 C C15 N Y N 0 -2.733 -1.514 -0.482
16 C18 C C16 N Y N 0 -1.382 -1.398 -0.63
17 C19 C C17 N Y N 0 -0.756 -0.17 -0.423
18 C21 C C18 N N N 0 1.691 -0.614 -0.859
19 C22 C C19 N N N 0 2.273 -1.243 0.409
20 C23 C C20 N N N 0 3.461 -2.133 0.038
21 C24 C C21 N N N 0 3.968 -2.858 1.288
22 C25 C C22 N N N 0 5.193 -3.699 0.923
23 C27 C C23 N N N 0 5.795 -2.156 -0.848
24 C28 C C24 N N N 0 4.588 -1.269 -0.536
25 N14 N N1 N Y N 0 -7.686 -0.822 0.322
26 N20 N N2 N Y N 0 0.554 0.237 -0.504
27 N26 N N3 N N N 0 6.243 -2.826 0.381
28 O01 O O1 N N N 0 2.911 1.876 -0.432
29 H1 H H1 N N N 0 1.136 4.368 -0.519
30 H2 H H2 N N N 0 1.364 3.958 1.198
31 H3 H H3 N N N 0 3.821 3.931 0.865
32 H4 H H4 N N N 0 3.593 4.34 -0.852
33 H5 H H5 N N N 0 2.473 6.454 -0.199
34 H6 H H6 N N N 0 2.701 6.044 1.518
35 H7 H H7 N N N 0 4.114 6.363 0.484
36 H8 H H8 N N N 0 -0.897 3.053 0.349
37 H9 H H9 N N N 0 -3.511 1.681 0.367
38 H10 H H10 N N N 0 -5.332 1.511 0.552
39 H11 H H11 N N N 0 -7.76 1.199 0.794
40 H12 H H12 N N N 0 -7.462 -2.827 -0.171
41 H13 H H13 N N N 0 -5.024 -2.653 -0.451
42 H14 H H14 N N N 0 -3.208 -2.47 -0.644
43 H15 H H15 N N N 0 -0.795 -2.261 -0.908
44 H16 H H16 N N N 0 2.457 -0.013 -1.35
45 H17 H H17 N N N 0 1.359 -1.402 -1.536
46 H18 H H18 N N N 0 2.606 -0.456 1.085
47 H19 H H19 N N N 0 1.508 -1.845 0.9
48 H20 H H20 N N N 0 3.149 -2.866 -0.707
49 H21 H H21 N N N 0 4.242 -2.125 2.047
50 H22 H H22 N N N 0 3.183 -3.507 1.676
51 H23 H H23 N N N 0 5.565 -4.205 1.814
52 H24 H H24 N N N 0 4.915 -4.44 0.174
53 H25 H H25 N N N 0 5.514 -2.906 -1.588
54 H26 H H26 N N N 0 6.605 -1.542 -1.243
55 H27 H H27 N N N 0 4.246 -0.785 -1.45
56 H28 H H28 N N N 0 4.872 -0.512 0.194
57 H29 H H29 N N N 0 7.095 -3.343 0.222