Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IMH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5' N N N 0 4.562 2.02 1.045
2 C5' C C5' N N N 0 4.195 1.245 -0.098
3 C4' C C4' R N N 0 3.179 0.178 0.314
4 N4' N N4' N N N 0 1.9 0.807 0.733
5 C3' C C3' R N N 0 2.767 -0.685 -0.905
6 O3' O O3' N N N 0 3.687 -1.761 -1.097
7 C2' C C2' S N N 0 1.376 -1.221 -0.495
8 O2' O O2' N N N 0 1.493 -2.535 0.054
9 C1' C C1' S N N 0 0.866 -0.239 0.576
10 C9 C C9 N Y N 0 -0.43 0.385 0.124
11 C8 C C8 N Y N 0 -0.563 1.559 -0.525
12 N7 N N7 N Y N 0 -1.881 1.796 -0.769
13 C5 C C5 N Y N 0 -2.619 0.75 -0.267
14 C6 C C6 N N N 0 -3.996 0.45 -0.226
15 O6 O O6 N N N 0 -4.816 1.211 -0.711
16 N1 N N1 N N N 0 -4.386 -0.701 0.364
17 C2 C C2 N N N 0 -3.469 -1.546 0.904
18 N3 N N3 N N N 0 -2.193 -1.29 0.878
19 C4 C C4 N Y N 0 -1.72 -0.16 0.3
20 HO'5 H HO'5 N N N 0 5.205 2.718 0.857
21 H5'1 H H5'1 N N N 0 3.754 1.895 -0.853
22 H5'2 H H5'2 N N N 0 5.082 0.762 -0.508
23 H4' H H4' N N N 0 3.58 -0.446 1.113
24 HN'4 H HN'4 N N N 0 1.949 1.125 1.689
25 H3' H H3' N N N 0 2.698 -0.073 -1.804
26 HO'3 H HO'3 N N N 0 3.474 -2.332 -1.847
27 H2' H H2' N N N 0 0.705 -1.229 -1.354
28 HO'2 H HO'2 N N N 0 1.852 -3.188 -0.562
29 H1' H H1' N N N 0 0.72 -0.762 1.521
30 H8 H H8 N N N 0 0.251 2.212 -0.807
31 HN7 H HN7 N N N 0 -2.24 2.574 -1.223
32 H2 H H2 N N N 0 -3.809 -2.459 1.369
33 H1 H H1 N N N 0 -5.328 -0.927 0.403