Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HSX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1' S N N 0 -2.673 -1.241 0.524
2 O4 O O1' N N N 0 -1.242 -1.105 0.497
3 C2 C C2' R N N 0 -3.269 0.179 0.557
4 O2 O O2' N N N 0 -4.115 0.393 -0.575
5 C3 C C3' S N N 0 -2.033 1.11 0.492
6 O3 O O3' N N N 0 -2.278 2.224 -0.37
7 C4 C C4' R N N 0 -0.953 0.175 -0.107
8 C5 C C5' N N N 0 0.448 0.65 0.284
9 O5 O O5' N N N 0 1.424 -0.222 -0.29
10 P' P P' N N N 0 3.009 -0.02 -0.085
11 O1X O O1X N N N 0 3.391 1.346 -0.507
12 O2X O O2X N N N 0 3.379 -0.226 1.468
13 O3X O O3X N N N 0 3.806 -1.1 -0.974
14 O1 O O1 N N Y 0 -3.118 -1.928 -0.648
15 H1 H H1' N N N 0 -2.978 -1.792 1.414
16 H2 H H2' N N N 0 -3.822 0.34 1.482
17 HO2 H HO2' N N Y 0 -4.875 -0.204 -0.615
18 H3 H H3' N N N 0 -1.748 1.447 1.488
19 HO3 H HO3' N N Y 0 -3.008 2.79 -0.083
20 H4 H H4' N N N 0 -1.051 0.118 -1.191
21 H51 H H5' N N N 0 0.604 1.663 -0.086
22 H52 H H5'A N N N 0 0.546 0.64 1.369
23 HO2X H HO2X N N N 0 3.155 -1.101 1.813
24 HO3X H HO3X N N N 0 4.768 -1.037 -0.9
25 HO1 H HO1 N N Y 0 -2.777 -2.829 -0.729