Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HCX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P R N N 0 1.444 -4.458 4.597
2 O1P O O1P N N N 0 0.88 -3.875 5.866
3 O2P O O2P N N N 0 0.669 -5.823 4.172
4 O5' O O5* N N N 0 1.157 -3.506 3.309
5 C4 C C4 R N N 0 0.681 -1.862 1.011
6 C7 C C7 N N N 0 0.885 -0.537 0.323
7 C2' C C2* N N N 0 2.466 -0.951 2.391
8 C5' C C5* N N N 0 1.359 -4.045 2.016
9 C4' C C4* R N N 0 1.768 -2.912 1.078
10 C1' C C1* R N N 0 1.11 -0.675 1.805
11 C3' C C3* S N N 0 3.009 -2.164 1.618
12 O3' O O3* N N N 0 3.807 -1.697 0.533
13 H2P H H2P N N N 0 -0.312 -5.834 4.2
14 H4 H H4 N N N 0 -0.327 -2.239 1.1
15 H71 H 1H7 N N N 0 0.0 0.0 0.0
16 H72 H 2H7 N N N 0 1.736 -0.407 -0.332
17 H2'1 H 1H2* N N N 0 3.116 -0.075 2.309
18 H2'2 H 2H2* N N N 0 2.343 -1.209 3.449
19 H5'1 H 1H5* N N N 0 2.149 -4.796 2.057
20 H5'2 H 2H5* N N N 0 0.434 -4.502 1.666
21 H4' H H4* N N N 0 1.952 -3.321 0.078
22 H1' H H1* N N N 0 0.415 -0.205 2.485
23 H1 H H1 N N N 0 3.654 -2.793 2.24
24 H3' H H3* N N N 0 4.317 -2.459 0.218
25 HP1 H HP1 N N Y 0 2.808 -4.796 4.464