Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GTP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 -6.03 -2.367 0.637
2 O1G O O1G N N N 0 -7.326 -1.996 0.026
3 O2G O O2G N N N 0 -6.285 -2.982 2.103
4 O3G O O3G N N N 0 -5.296 -3.463 -0.286
5 O3B O O3B N N N 0 -5.101 -1.058 0.758
6 PB P PB N N N 0 -4.818 0.206 -0.199
7 O1B O O1B N N N 0 -4.732 -0.25 -1.605
8 O2B O O2B N N N 0 -6.017 1.269 -0.052
9 O3A O O3A N N N 0 -3.429 0.9 0.226
10 PA P PA N N N 0 -2.449 1.965 -0.479
11 O1A O O1A N N N 0 -2.35 1.662 -1.925
12 O2A O O2A N N N 0 -3.04 3.45 -0.282
13 O5' O O5' N N N 0 -0.988 1.876 0.19
14 C5' C C5' N N N 0 0.134 2.622 -0.287
15 C4' C C4' R N N 0 1.36 2.304 0.57
16 O4' O O4' N N N 0 1.749 0.933 0.378
17 C3' C C3' S N N 0 2.548 3.182 0.132
18 O3' O O3' N N N 0 2.994 3.997 1.218
19 C2' C C2' R N N 0 3.645 2.166 -0.269
20 O2' O O2' N N N 0 4.929 2.593 0.19
21 C1' C C1' R N N 0 3.188 0.886 0.476
22 N9 N N9 N Y N 0 3.711 -0.311 -0.188
23 C8 C C8 N Y N 0 3.094 -1.021 -1.176
24 N7 N N7 N Y N 0 3.843 -2.023 -1.533
25 C5 C C5 N Y N 0 4.981 -2.017 -0.798
26 C6 C C6 N N N 0 6.129 -2.842 -0.753
27 O6 O O6 N N N 0 6.235 -3.807 -1.491
28 N1 N N1 N N N 0 7.106 -2.535 0.129
29 C2 C C2 N N N 0 6.978 -1.454 0.95
30 N2 N N2 N N N 0 7.986 -1.165 1.835
31 N3 N N3 N N N 0 5.916 -0.679 0.917
32 C4 C C4 N Y N 0 4.911 -0.918 0.066
33 HOG2 H HOG2 N N N 0 -6.838 -3.775 2.106
34 HOG3 H HOG3 N N N 0 -4.439 -3.753 0.055
35 H5'' H H5'2 N N N 0 -0.086 3.688 -0.226
36 HOB2 H HOB2 N N N 0 -6.132 1.611 0.846
37 HOA2 H HOA2 N N N 0 -3.133 3.717 0.643
38 H5' H H5'1 N N N 0 0.335 2.352 -1.324
39 H3' H H3' N N N 0 2.27 3.803 -0.72
40 H4' H H4' N N N 0 1.133 2.48 1.621
41 HO3' H HO3' N N Y 0 3.741 4.571 0.998
42 H2' H H2' N N N 0 3.652 2.007 -1.347
43 HO2' H HO2' N N N 0 5.218 3.438 -0.18
44 H1' H H1' N N N 0 3.503 0.916 1.519
45 H8 H H8 N N N 0 2.128 -0.786 -1.599
46 HN1 H HN1 N N N 0 7.903 -3.086 0.179
47 HN21 H HN21 N N N 0 8.776 -1.728 1.87
48 HN22 H HN22 N N N 0 7.909 -0.399 2.425