Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GSP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 -1.026 -0.484 6.915
2 O3B O O3B N N N 0 -1.015 -1.198 5.472
3 S1G S S1G N N N 0 -1.772 1.216 6.761
4 O2G O O2G N N N 0 -1.9 -1.363 7.942
5 O3G O O3G N N N 0 0.482 -0.36 7.463
6 PB P PB S N N 0 -0.128 -0.27 4.5
7 O1B O O1B N N N 0 -0.735 1.076 4.415
8 O2B O O2B N N N 0 1.365 -0.15 5.089
9 PA P PA S N N 0 0.823 0.046 2.117
10 O1A O O1A N N N 0 0.201 1.388 2.069
11 O2A O O2A N N N 0 2.3 0.161 2.746
12 O3A O O3A N N N 0 -0.074 -0.928 3.031
13 O5' O O5* N N N 0 0.919 -0.554 0.627
14 C5' C C5* N N N 0 1.724 0.35 -0.131
15 C4' C C4* R N N 0 1.857 -0.164 -1.566
16 O4' O O4* N N N 0 0.559 -0.236 -2.196
17 C3' C C3* S N N 0 2.659 0.836 -2.427
18 O3' O O3* N N N 0 4.023 0.424 -2.534
19 C2' C C2* R N N 0 1.965 0.783 -3.809
20 O2' O O2* N N N 0 2.881 0.339 -4.812
21 C1' C C1* R N N 0 0.825 -0.24 -3.615
22 N9 N N9 N Y N 0 -0.366 0.176 -4.358
23 C8 C C8 N Y N 0 -1.361 0.989 -3.898
24 N7 N N7 N Y N 0 -2.263 1.148 -4.822
25 C5 C C5 N Y N 0 -1.902 0.451 -5.926
26 C6 C C6 N N N 0 -2.48 0.259 -7.203
27 O6 O O6 N N N 0 -3.539 0.788 -7.495
28 N1 N N1 N N N 0 -1.827 -0.519 -8.093
29 C2 C C2 N N N 0 -0.646 -1.11 -7.754
30 N2 N N2 N N N 0 -0.008 -1.9 -8.677
31 N3 N N3 N N N 0 -0.098 -0.94 -6.572
32 C4 C C4 N Y N 0 -0.685 -0.177 -5.641
33 HOG2 H 2HOG N N N 0 -1.88 -0.901 8.791
34 HOG3 H 3HOG N N N 0 0.831 -1.26 7.528
35 HOB2 H 2HOB N N N 0 1.723 -1.047 5.128
36 HOA2 H 2HOA N N N 0 2.669 -0.732 2.759
37 H5'1 H 1H5* N N N 0 2.713 0.423 0.321
38 H5'2 H 2H5* N N N 0 1.255 1.334 -0.14
39 H4' H H4* N N N 0 2.337 -1.142 -1.574
40 H3' H H3* N N N 0 2.596 1.839 -2.005
41 HO3' H *HO3 N N N 0 4.472 1.083 -3.08
42 H2' H H2* N N N 0 1.559 1.76 -4.07
43 HO2' H *HO2 N N N 0 3.598 0.987 -4.842
44 H1' H H1* N N N 0 1.146 -1.23 -3.938
45 H8 H H8 N N N 0 -1.395 1.433 -2.914
46 HN1 H HN1 N N N 0 -2.204 -0.665 -8.975
47 HN21 H 1HN2 N N N 0 0.834 -2.324 -8.451
48 HN22 H 2HN2 N N N 0 -0.401 -2.039 -9.552