Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GMP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5* N N N 0 4.797 1.917 0.937
2 C5' C C5* N N N 0 4.46 0.983 -0.092
3 C4' C C4* R N N 0 3.386 0.023 0.423
4 O4' O O4* N N N 0 2.161 0.738 0.655
5 C3' C C3* S N N 0 3.093 -1.054 -0.64
6 O3' O O3* N N N 0 3.371 -2.356 -0.123
7 C2' C C2* R N N 0 1.581 -0.897 -0.932
8 O2' O O2* N N N 0 0.952 -2.174 -1.065
9 C1' C C1* R N N 0 1.079 -0.164 0.338
10 N9 N N9 N Y N 0 -0.148 0.583 0.051
11 C8 C C8 N Y N 0 -0.224 1.879 -0.37
12 N7 N N7 N Y N 0 -1.47 2.219 -0.526
13 C5 C C5 N Y N 0 -2.265 1.166 -0.216
14 C6 C C6 N N N 0 -3.664 0.958 -0.202
15 O6 O O6 N N N 0 -4.432 1.851 -0.519
16 N1 N N1 N N N 0 -4.129 -0.254 0.171
17 C2 C C2 N N N 0 -3.262 -1.245 0.524
18 N2 N N2 N N N 0 -3.763 -2.467 0.899
19 N3 N N3 N N N 0 -1.961 -1.065 0.515
20 C4 C C4 N Y N 0 -1.427 0.107 0.151
21 HO5' H *HO5 N N N 0 5.473 2.558 0.68
22 H5'1 H 1H5* N N N 0 4.081 1.521 -0.961
23 H5'2 H 2H5* N N N 0 5.348 0.418 -0.374
24 H4' H H4* N N N 0 3.721 -0.447 1.347
25 H3' H H3* N N N 0 3.678 -0.87 -1.541
26 HO3' H *HO3 N N N 0 4.294 -2.49 0.132
27 H2' H H2* N N N 0 1.417 -0.291 -1.823
28 HO2' H *HO2 N N N 0 1.298 -2.708 -1.793
29 H1' H H1* N N N 0 0.918 -0.871 1.151
30 H8 H H8 N N N 0 0.623 2.526 -0.547
31 HN1 H HN1 N N N 0 -5.085 -0.42 0.189
32 HN22 H 2HN2 N N N 0 -3.159 -3.182 1.152
33 HN21 H 1HN2 N N N 0 -4.722 -2.615 0.91