Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GCU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 23


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.509 -0.087 -1.086
2 C2 C C2 R N N 0 0.272 -0.527 -1.873
3 C3 C C3 S N N 0 -0.97 0.115 -1.253
4 C4 C C4 S N N 0 -0.999 -0.216 0.242
5 C5 C C5 S N N 0 0.332 0.199 0.871
6 O3 O O3 N N N 0 -2.146 -0.4 -1.881
7 C6 C C6 N N N 0 0.3 -0.093 2.349
8 O1 O O1 N N Y 0 1.609 1.337 -1.116
9 O2 O O2 N N N 0 0.399 -0.109 -3.234
10 O4 O O4 N N N 0 -2.067 0.493 0.871
11 O5 O O5 N N N 0 1.4 -0.526 0.266
12 O6A O O6A N N N 0 1.11 -0.848 2.832
13 O6B O O6B N N N 0 -0.627 0.483 3.128
14 H1 H H1 N N N 0 2.4 -0.523 -1.538
15 H2 H H2 N N N 0 0.181 -1.612 -1.832
16 H3 H H3 N N N 0 -0.929 1.196 -1.387
17 H4 H H4 N N N 0 -1.146 -1.288 0.375
18 H5 H H5 N N N 0 0.487 1.267 0.717
19 HO1 H HO1 N N Y 0 2.4 1.572 -0.612
20 HO2 H HO2 N N Y 0 1.192 -0.536 -3.585
21 HO3 H HO3 N N Y 0 -2.086 -0.169 -2.818
22 HO4 H HO4 N N Y 0 -2.044 0.26 1.809
23 HO6B H HOB N N N 0 -0.648 0.295 4.076