Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GBM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3 O O1 N N N 0 4.821 0.201 -0.816
2 O4 O O2 N N N 0 3.931 3.694 1.27
3 O5 O O3 N N N 0 4.281 2.836 -1.051
4 O6 O O4 N N N 0 -4.766 1.761 -0.668
5 CL1 CL CL1 N N N 0 -7.474 -3.681 0.918
6 S2 S S1 N N N 0 4.002 2.633 0.327
7 O7 O O5 N N N 0 -7.236 1.838 -1.067
8 N8 N N1 N N N 0 6.363 -0.4 0.666
9 N9 N N2 N N N 0 5.155 1.585 0.889
10 N10 N N3 N N N 0 -3.694 -0.006 0.145
11 C11 C C1 N N N 0 6.656 -1.63 -0.073
12 C12 C C2 N N N 0 7.233 -2.675 0.885
13 C13 C C3 N N N 0 7.674 -1.333 -1.176
14 C14 C C4 N N N 0 7.539 -3.96 0.113
15 C15 C C5 N N N 0 7.98 -2.618 -1.947
16 C16 C C6 N N N 0 8.556 -3.663 -0.99
17 C17 C C7 N N N 0 5.424 0.453 0.209
18 C18 C C8 N Y N 0 2.454 1.796 0.404
19 C19 C C9 N Y N 0 0.024 0.481 0.524
20 C20 C C10 N N N 0 -1.3 -0.235 0.589
21 C21 C C11 N Y N 0 2.016 1.051 -0.676
22 C22 C C12 N Y N 0 1.679 1.878 1.546
23 C26 C C16 N N N 0 -4.819 0.619 -0.255
24 C23 C C13 N Y N 0 0.802 0.394 -0.616
25 C24 C C14 N Y N 0 0.464 1.221 1.606
26 C25 C C15 N N N 0 -2.407 0.691 0.081
27 C27 C C17 N Y N 0 -6.115 -0.083 -0.19
28 C28 C C18 N Y N 0 -7.288 0.563 -0.605
29 C29 C C19 N Y N 0 -6.18 -1.397 0.279
30 C30 C C20 N Y N 0 -8.501 -0.106 -0.541
31 C31 C C21 N Y N 0 -7.394 -2.048 0.336
32 C32 C C22 N Y N 0 -8.552 -1.403 -0.071
33 C33 C C23 N N N 0 -8.471 2.432 -1.472
34 H1 H H1 N N N 0 6.844 -0.199 1.484
35 H2 H H2 N N N 0 5.636 1.786 1.707
36 H6 H H6 N N N 0 6.507 -2.887 1.671
37 H3 H H3 N N N 0 -3.736 -0.917 0.475
38 H4 H H4 N N N 0 5.738 -2.014 -0.519
39 H5 H H5 N N N 0 8.15 -2.292 1.331
40 H7 H H7 N N N 0 7.263 -0.589 -1.858
41 H8 H H8 N N N 0 8.591 -0.949 -0.73
42 H9 H H9 N N N 0 7.95 -4.704 0.796
43 H10 H H10 N N N 0 6.621 -4.344 -0.333
44 H11 H H11 N N N 0 7.062 -3.001 -2.393
45 H12 H H12 N N N 0 8.705 -2.406 -2.733
46 H13 H H13 N N N 0 9.474 -3.279 -0.544
47 H14 H H14 N N N 0 8.775 -4.578 -1.539
48 H15 H H15 N N N 0 -1.26 -1.13 -0.033
49 H16 H H16 N N N 0 -1.508 -0.519 1.621
50 H17 H H17 N N N 0 2.624 0.983 -1.566
51 H18 H H18 N N N 0 2.022 2.456 2.391
52 H19 H H19 N N N 0 0.46 -0.187 -1.459
53 H20 H H20 N N N 0 -0.143 1.289 2.496
54 H21 H H21 N N N 0 -2.198 0.975 -0.95
55 H22 H H22 N N N 0 -2.447 1.585 0.703
56 H23 H H23 N N N 0 -5.28 -1.903 0.596
57 H24 H H24 N N N 0 -9.407 0.389 -0.859
58 H25 H H25 N N N 0 -9.5 -1.919 -0.023
59 H27 H H27 N N N 0 -9.158 2.454 -0.625
60 H26 H H26 N N N 0 -8.909 1.845 -2.279
61 H28 H H28 N N N 0 -8.289 3.449 -1.819