Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G4P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PB P PB N N N 0 4.684 -4.187 -0.023
2 O1B O O1B N N N 0 4.172 -4.147 1.365
3 O2B O O2B N N N 0 4.94 -5.716 -0.457
4 O3B O O3B N N N 0 6.067 -3.367 -0.109
5 O3A O O3A N N N 0 3.603 -3.522 -1.014
6 PA P PA S N N 0 3.099 -2.165 -0.308
7 O1A O O1A N N N 0 2.938 -2.395 1.145
8 O2A O O2A N N N 0 4.183 -0.999 -0.551
9 O5' O O5* N N N 0 1.686 -1.724 -0.942
10 C5' C C5* N N N 0 1.237 -0.589 -0.199
11 C4' C C4* R N N 0 -0.109 -0.117 -0.753
12 O4' O O4* N N N 0 -1.129 -1.11 -0.51
13 C3' C C3* S N N 0 -0.594 1.14 0.004
14 O3' O O3* N N N 0 -0.281 2.322 -0.736
15 C2' C C2* R N N 0 -2.126 0.951 0.104
16 O2' O O2* N N N 0 -2.806 2.013 -0.569
17 C1' C C1* R N N 0 -2.382 -0.399 -0.602
18 N9 N N9 N Y N 0 -3.442 -1.141 0.086
19 C8 C C8 N Y N 0 -3.267 -2.078 1.063
20 N7 N N7 N Y N 0 -4.423 -2.533 1.449
21 C5 C C5 N Y N 0 -5.405 -1.919 0.745
22 C6 C C6 N N N 0 -6.816 -2.01 0.738
23 O6 O O6 N N N 0 -7.397 -2.778 1.486
24 N1 N N1 N N N 0 -7.506 -1.221 -0.115
25 C2 C C2 N N N 0 -6.847 -0.37 -0.952
26 N2 N N2 N N N 0 -7.573 0.415 -1.812
27 N3 N N3 N N N 0 -5.536 -0.276 -0.954
28 C4 C C4 N Y N 0 -4.787 -1.022 -0.133
29 PC P PC S N N 0 0.677 3.216 0.2
30 O1C O O1C N N N 0 1.848 2.413 0.617
31 O2C O O2C N N N 0 -0.139 3.693 1.503
32 O3C O O3C N N N 0 1.176 4.507 -0.623
33 PD P PD N N N 0 2.495 5.052 0.123
34 O1D O O1D N N N 0 2.307 4.96 1.588
35 O2D O O2D N N N 0 3.764 4.163 -0.312
36 O3D O O3D N N N 0 2.749 6.588 -0.29
37 HOB2 H 2HOB N N N 0 5.591 -6.077 0.159
38 HOB3 H 3HOB N N N 0 6.365 -3.417 -1.027
39 H5' H 1H5* N N N 0 1.968 0.215 -0.286
40 HOA2 H 2HOA N N N 0 4.258 -0.882 -1.508
41 H5'' H 2H5* N N N 0 1.122 -0.863 0.85
42 H4' H H4* N N N 0 -0.028 0.091 -1.82
43 H1' H H1* N N N 0 -2.651 -0.236 -1.646
44 H3' H H3* N N N 0 -0.148 1.183 0.998
45 H2' H H2* N N N 0 -2.437 0.901 1.147
46 HO2' H *HO2 N N N 0 -3.753 1.843 -0.474
47 H8 H H8 N N N 0 -2.312 -2.394 1.457
48 HN1 H HN1 N N N 0 -8.475 -1.266 -0.138
49 HN21 H 1HN2 N N N 0 -7.119 1.028 -2.41
50 HN22 H 2HN2 N N N 0 -8.541 0.353 -1.824
51 H2C H H2C N N N 0 -0.892 4.211 1.188
52 H2D H H2D N N N 0 3.851 4.25 -1.271
53 H3D H H3D N N N 0 3.546 6.874 0.177