Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : FM1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -0.475 -1.113 3.952
2 C2 C C2 N Y N 0 -0.969 -1.844 2.967
3 N3 N N3 N Y N 0 -0.848 -1.504 1.705
4 C4 C C4 N Y N 0 -0.206 -0.38 1.361
5 C5 C C5 N Y N 0 0.33 0.43 2.378
6 C6 C C6 N Y N 0 0.177 0.018 3.709
7 N6 N N6 N N N 0 0.69 0.775 4.747
8 N7 N N7 N Y N 0 0.923 1.497 1.76
9 N8 N N8 N Y N 0 0.753 1.346 0.377
10 C9 C C9 N Y N 0 0.089 0.251 0.134
11 C1' C C1' S N N 0 -0.292 -0.259 -1.23
12 C2' C C2' R N N 0 -1.152 0.786 -1.975
13 O2' O O2' N N N 0 -2.541 0.47 -1.868
14 C3' C C3' S N N 0 -0.682 0.677 -3.445
15 O3' O O3' N N N 0 -1.767 0.287 -4.289
16 C4' C C4' R N N 0 0.4 -0.423 -3.412
17 O4' O O4' N N N 0 0.883 -0.426 -2.051
18 C5' C C5' N N N 0 1.536 -0.085 -4.38
19 O5' O O5' N N N 0 2.558 -1.078 -4.28
20 C66 C C66 N N N 0 0.515 0.333 6.133
21 H2 H H2 N N N 0 -1.493 -2.757 3.211
22 HN61 H 1HN6 N N N 0 1.165 1.599 4.558
23 H7 H H7 N N N 0 1.38 2.23 2.201
24 H1' H H1' N N N 0 -0.832 -1.202 -1.144
25 H2' H H2' N N N 0 -0.957 1.785 -1.585
26 HO2' H 'HO2 N N N 0 -3.018 1.12 -2.401
27 H3' H H3' N N N 0 -0.257 1.621 -3.782
28 HO3' H 'HO3 N N N 0 -1.403 0.175 -5.178
29 H4' H H4' N N N 0 -0.034 -1.391 -3.663
30 H5'1 H 1H5' N N N 0 1.15 -0.061 -5.399
31 H5'2 H 2H5' N N N 0 1.951 0.89 -4.126
32 HO5' H 'HO5 N N N 0 3.253 -0.827 -4.904
33 H661 H 1H66 N N N 0 0.982 1.052 6.806
34 H662 H 2H66 N N N 0 -0.548 0.26 6.36
35 H663 H 3H66 N N N 0 0.981 -0.643 6.264