Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : EDT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O20 O O20 N N N 0 1.901 -2.478 3.856
2 C5 C C5 N N N 0 1.284 -1.369 3.417
3 O19 O O19 N N N 0 1.227 -0.39 4.123
4 C4 C C4 N N N 0 0.663 -1.346 2.044
5 N3 N N3 N N N 0 0.056 -0.03 1.804
6 C2 C C2 N N N 0 -1.063 0.096 2.745
7 C1 C C1 N N N 0 -1.47 1.543 2.851
8 O18 O O18 N N N 0 -0.864 2.387 2.235
9 O17 O O17 N N N 0 -2.506 1.894 3.629
10 C6 C C6 N N N 0 -0.527 -0.074 0.456
11 C7 C C7 N N N 0 0.592 -0.17 -0.581
12 N8 N N8 N N N 0 0.019 -0.071 -1.93
13 C9 C C9 N N N 0 1.141 -0.171 -2.873
14 C10 C C10 N N N 0 1.892 1.135 -2.9
15 O16 O O16 N N N 0 2.907 1.308 -3.761
16 O15 O O15 N N N 0 1.58 2.026 -2.146
17 C11 C C11 N N N 0 -0.805 -1.271 -2.127
18 C12 C C12 N N N 0 -1.725 -1.06 -3.302
19 O13 O O13 N N N 0 -1.697 -0.018 -3.912
20 O14 O O14 N N N 0 -2.575 -2.031 -3.671
21 H20 H H20 N N N 0 2.3 -2.493 4.737
22 H041 H 1H04 N N N 0 1.432 -1.533 1.294
23 H042 H 2H04 N N N 0 -0.103 -2.117 1.979
24 H021 H 1H02 N N N 0 -1.907 -0.493 2.387
25 H022 H 2H02 N N N 0 -0.756 -0.267 3.726
26 H17 H H17 N N N 0 -2.767 2.822 3.696
27 H061 H 1H06 N N N 0 -1.177 -0.944 0.371
28 H062 H 2H06 N N N 0 -1.107 0.831 0.282
29 H071 H 1H07 N N N 0 1.302 0.642 -0.427
30 H072 H 2H07 N N N 0 1.106 -1.126 -0.473
31 H091 H 1H09 N N N 0 1.812 -0.969 -2.557
32 H092 H 2H09 N N N 0 0.759 -0.391 -3.87
33 H16 H H16 N N N 0 3.389 2.146 -3.778
34 H111 H 1H11 N N N 0 -0.159 -2.128 -2.32
35 H112 H 2H11 N N N 0 -1.397 -1.456 -1.231
36 H14 H H14 N N N 0 -3.165 -1.896 -4.425