Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DB8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAA C CAA N N N 0 0.469 3.936 0.08
2 O02 O O02 N N N 0 -7.723 0.363 -1.604
3 CAC C CAC N N N 0 6.573 -0.957 0.193
4 NAD N NAD N N N 0 -4.978 -2.202 -0.964
5 CL1 CL CLAE N N N 0 -8.63 -0.361 1.112
6 CL2 CL CLAF N N N 0 -3.393 0.107 2.348
7 CAG C CAG N N N 0 -3.885 -1.923 -0.834
8 CAH C CAH N Y N 0 -1.516 -2.566 -0.659
9 CAI C CAI N Y N 0 -5.975 -0.084 1.559
10 CAJ C CAJ N Y N 0 -5.414 0.572 -1.077
11 CAK C CAK N Y N 0 1.541 -0.725 -0.221
12 CAL C CAL N Y N 0 -0.305 1.38 -0.211
13 CAM C CAM N N N 0 5.614 0.235 0.214
14 CAN C CAN N N N 0 4.177 -0.264 0.046
15 CAO C CAO N N N 0 12.084 0.226 -0.179
16 CAP C CAP N N N 0 8.37 0.323 -0.804
17 CAQ C CAQ N N N 0 8.876 -1.599 0.577
18 CAR C CAR N N N 0 9.78 0.868 -0.562
19 CAS C CAS N N N 0 10.286 -1.055 0.818
20 NAT N NAT N Y N 0 -0.249 -2.272 -0.517
21 NAU N NAU N N N 0 -3.073 0.782 -0.529
22 OAV O OAV N N N 0 1.463 2.909 0.089
23 OAW O OAW N N N 0 3.281 0.849 0.066
24 CAX C CAX N Y N 0 -6.718 0.304 -0.691
25 CAY C CAY N Y N 0 -6.997 -0.024 0.629
26 CAZ C CAZ N Y N 0 -4.674 0.182 1.178
27 CBA C CBA N Y N 0 -2.506 -1.571 -0.671
28 CBB C CBB N Y N 0 -4.389 0.512 -0.143
29 CBC C CBC N Y N 0 1.029 1.629 -0.061
30 CBD C CBD N Y N 0 1.957 0.578 -0.072
31 CBE C CBE N Y N 0 -2.13 -0.227 -0.522
32 CBF C CBF N Y N 0 0.175 -1.008 -0.37
33 CBG C CBG N Y N 0 -0.755 0.06 -0.365
34 NBH N NBH N N N 0 7.952 -0.478 0.355
35 NBI N NBI N N N 0 10.704 -0.253 -0.34
36 C01 C C01 N N N 0 -7.382 0.816 -2.916
37 HAA H HAA N N N 0 0.948 4.906 0.208
38 HAAA H HAAA N N N 0 -0.064 3.917 -0.871
39 HAAB H HAAB N N N 0 -0.235 3.768 0.895
40 HAC H HAC N N N 0 6.326 -1.637 1.009
41 HACA H HACA N N N 0 6.479 -1.482 -0.757
42 HAH H HAH N N N 0 -1.807 -3.6 -0.773
43 HAI H HAI N N N 0 -6.195 -0.336 2.586
44 HAJ H HAJ N N N 0 -5.195 0.828 -2.103
45 HAK H HAK N N N 0 2.264 -1.528 -0.223
46 HAL H HAL N N N 0 -1.011 2.197 -0.21
47 HAM H HAM N N N 0 5.707 0.76 1.165
48 HAMA H HAMA N N N 0 5.86 0.914 -0.602
49 HAN H HAN N N N 0 4.084 -0.789 -0.905
50 HANA H HANA N N N 0 3.931 -0.943 0.862
51 HAO H HAO N N N 0 12.756 -0.627 -0.084
52 HAOA H HAOA N N N 0 12.368 0.816 -1.051
53 HAOB H HAOB N N N 0 12.152 0.844 0.716
54 HAP H HAP N N N 0 7.678 1.154 -0.94
55 HAPA H HAPA N N N 0 8.37 -0.301 -1.697
56 HAQ H HAQ N N N 0 8.882 -2.246 -0.301
57 HAQA H HAQA N N N 0 8.552 -2.171 1.447
58 HAR H HAR N N N 0 10.104 1.439 -1.433
59 HARA H HARA N N N 0 9.775 1.515 0.315
60 HAS H HAS N N N 0 10.287 -0.43 1.712
61 HASA H HASA N N N 0 10.979 -1.885 0.955
62 HNAU H HNAU N N N 0 -2.822 1.678 -0.802
63 H01 H H01 N N N 0 -8.287 0.897 -3.519
64 H01A H H01A N N N 0 -6.901 1.791 -2.85
65 H01B H H01B N N N 0 -6.699 0.104 -3.38