Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D23

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -4.632 0.864 0.482
2 C2 C C2 N Y N 0 -5.949 0.43 0.449
3 C3 C C3 N Y N 0 -6.287 -0.711 -0.268
4 C4 C C4 N Y N 0 -5.314 -1.413 -0.955
5 C5 C C5 N Y N 0 -4.002 -0.985 -0.932
6 C6 C C6 N Y N 0 -3.654 0.159 -0.214
7 N7 N N7 N N N 0 -6.935 1.138 1.142
8 C8 C C8 N Y N 0 -2.244 0.62 -0.189
9 C9 C C9 N Y N 0 -1.959 1.992 -0.261
10 C10 C C10 N Y N 0 -0.675 2.441 -0.238
11 C11 C C11 N Y N 0 0.384 1.526 -0.143
12 C12 C C12 N Y N 0 0.106 0.138 -0.076
13 C13 C C13 N Y N 0 -1.219 -0.306 -0.094
14 N14 N N14 N Y N 0 1.664 1.927 -0.118
15 C15 C C15 N Y N 0 2.635 1.05 -0.029
16 N16 N N16 N Y N 0 2.424 -0.255 0.042
17 C17 C C17 N Y N 0 1.197 -0.76 0.025
18 N18 N N18 N N N 0 0.99 -2.12 0.099
19 C19 C C19 N N N 0 2.134 -3.031 0.197
20 C20 C C20 N N N 0 2.935 -2.709 1.461
21 C21 C C21 N N N 0 3.029 -2.859 -1.031
22 C22 C C22 N N N 0 1.632 -4.474 0.265
23 C23 C C23 N N N 0 4.056 1.55 -0.004
24 F24 F F24 N N N 0 4.432 1.95 -1.291
25 F25 F F25 N N N 0 4.152 2.639 0.869
26 F26 F F26 N N N 0 4.904 0.526 0.432
27 H1 H H1 N N N 0 -4.367 1.75 1.04
28 H3 H H3 N N N 0 -7.312 -1.05 -0.289
29 H4 H H4 N N N 0 -5.582 -2.299 -1.511
30 H5 H H5 N N N 0 -3.245 -1.536 -1.47
31 HN71 H 1HN7 N N N 0 -7.855 0.832 1.122
32 HN72 H 2HN7 N N N 0 -6.699 1.934 1.643
33 H9 H H9 N N N 0 -2.77 2.701 -0.334
34 H10 H H10 N N N 0 -0.471 3.5 -0.294
35 H13 H H13 N N N 0 -1.441 -1.362 -0.039
36 H18 H H18 N N N 0 0.088 -2.475 0.086
37 H201 H 1H20 N N N 0 3.292 -1.681 1.413
38 H202 H 2H20 N N N 0 2.297 -2.832 2.336
39 H203 H 3H20 N N N 0 3.785 -3.387 1.534
40 H211 H 1H21 N N N 0 3.88 -3.536 -0.958
41 H212 H 2H21 N N N 0 2.459 -3.088 -1.931
42 H213 H 3H21 N N N 0 3.387 -1.831 -1.079
43 H221 H 1H22 N N N 0 0.994 -4.597 1.14
44 H222 H 2H22 N N N 0 1.062 -4.703 -0.635
45 H223 H 3H22 N N N 0 2.483 -5.152 0.338