Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CTP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 0.558 0.502 -4.978
2 C2 C C2 N N N 0 1.196 -0.671 -4.818
3 N3 N N3 N N N 0 2.313 -0.944 -5.492
4 C4 C C4 N N N 0 2.825 -0.061 -6.34
5 C5 C C5 N N N 0 2.184 1.18 -6.526
6 C6 C C6 N N N 0 1.046 1.44 -5.838
7 O2 O O2 N N N 0 0.745 -1.498 -4.044
8 N4 N N4 N N N 0 3.979 -0.354 -7.029
9 C1' C C1* R N N 0 -0.667 0.774 -4.224
10 C2' C C2* R N N 0 -1.737 -0.296 -4.533
11 O2' O O2* N N N 0 -2.665 0.181 -5.509
12 C3' C C3* S N N 0 -2.445 -0.52 -3.176
13 C4' C C4* R N N 0 -1.721 0.444 -2.211
14 O4' O O4* N N N 0 -0.421 0.654 -2.805
15 O3' O O3* N N N 0 -3.831 -0.184 -3.272
16 C5' C C5* N N N 0 -1.576 -0.192 -0.827
17 O5' O O5* N N N 0 -0.841 0.686 0.026
18 PA P PA S N N 0 -0.727 -0.042 1.457
19 O1A O O1A N N N 0 -0.021 -1.333 1.298
20 O2A O O2A N N N 0 -2.203 -0.307 2.043
21 O3A O O3A N N N 0 0.093 0.896 2.475
22 PB P PB R N N 0 0.168 0.109 3.877
23 O1B O O1B N N N 0 0.86 -1.183 3.681
24 O2B O O2B N N N 0 -1.323 -0.157 4.423
25 O3B O O3B N N N 0 0.98 0.996 4.948
26 PG P PG N N N 0 1.016 0.153 6.319
27 O1G O O1G N N N 0 1.695 -1.14 6.085
28 O2G O O2G N N N 0 1.817 0.986 7.44
29 O3G O O3G N N N 0 -0.489 -0.113 6.824
30 H5 H H5 N N N 0 2.588 1.908 -7.212
31 H6 H H6 N N N 0 0.534 2.382 -5.967
32 HN41 H 1HN4 N N N 0 4.42 -1.207 -6.896
33 HN42 H 2HN4 N N N 0 4.349 0.291 -7.651
34 H1' H H1* N N N 0 -1.045 1.768 -4.461
35 H2' H H2* N N N 0 -1.265 -1.217 -4.874
36 HO2' H *HO2 N N N 0 -3.339 -0.504 -5.613
37 H3' H H3* N N N 0 -2.325 -1.552 -2.847
38 H4' H H4* N N N 0 -2.262 1.387 -2.139
39 HO3' H *HO3 N N N 0 -4.229 -0.817 -3.885
40 H5'1 H 1H5* N N N 0 -2.565 -0.368 -0.403
41 H5'2 H 2H5* N N N 0 -1.045 -1.14 -0.917
42 HOA2 H 2HOA N N N 0 -2.628 0.557 2.131
43 HOB2 H 2HOB N N N 0 -1.738 0.708 4.537
44 HOG2 H 2HOG N N N 0 1.815 0.447 8.243
45 HOG3 H 3HOG N N N 0 -0.895 0.752 6.964