Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CJB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 1.312 -0.031 0.072
2 O2A O O2 N N N 0 1.897 0.206 2.194
3 C2A C C2 N N N 0 2.243 0.031 1.041
4 N3 N N3 N N N 0 3.551 -0.098 0.753
5 C4A C C4 N N N 0 3.951 -0.293 -0.519
6 O4A O O4 N N N 0 5.135 -0.411 -0.781
7 C5A C C5 N N N 0 2.982 -0.361 -1.549
8 C6A C C6 N N N 0 1.676 -0.228 -1.233
9 C1 C C1' R N N 0 -0.105 0.107 0.416
10 O5 O O5' N N N 0 -0.828 -1.023 -0.077
11 C5 C C5' R N N 0 -2.224 -1.002 0.229
12 C6 C C6' N N N 0 -2.886 -2.267 -0.32
13 O6 O O6' N N N 0 -2.367 -3.411 0.362
14 C4 C C4' S N N 0 -2.867 0.231 -0.413
15 O4 O O4' N N N 0 -4.25 0.286 -0.061
16 C3 C C3' S N N 0 -2.158 1.49 0.097
17 O3 O O3' N N N 0 -2.703 2.64 -0.553
18 C2 C C2' R N N 0 -0.663 1.384 -0.218
19 O2 O O2' N N N 0 0.019 2.52 0.317
20 HN3 H HN3 N N N 0 4.209 -0.051 1.465
21 H5A H H5 N N N 0 3.283 -0.516 -2.575
22 H6 H H6 N N N 0 0.923 -0.277 -2.005
23 H1 H H1' N N N 0 -0.212 0.162 1.5
24 H5 H H5' N N N 0 -2.359 -0.961 1.31
25 H61 H H6' N N N 0 -3.963 -2.21 -0.166
26 H62 H H6'A N N N 0 -2.676 -2.353 -1.386
27 HO6 H HO6' N N Y 0 -2.743 -4.25 0.064
28 H4 H H4' N N N 0 -2.769 0.17 -1.497
29 HO4 H HO4' N N Y 0 -4.721 1.043 -0.434
30 H3 H H3' N N N 0 -2.3 1.578 1.174
31 HO3 H HO3' N N Y 0 -3.65 2.766 -0.402
32 H2 H H2' N N N 0 -0.52 1.347 -1.298
33 HO2 H HO2' N N Y 0 -0.284 3.365 -0.042