Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : CG5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 80


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 4.786 1.248 0.444
2 C02 C C2 N N N 0 4.661 2.781 -1.492
3 C03 C C3 S N N 0 4.195 4.244 -1.696
4 C05 C C4 R N N 0 3.348 4.573 -0.447
5 C07 C C5 R N N 0 3.328 3.252 0.375
6 C08 C C6 N N N 0 2.112 2.463 -0.126
7 C10 C C7 N Y N 0 3.505 0.461 0.347
8 C11 C C8 N Y N 0 3.335 -0.882 0.483
9 C12 C C9 N Y N 0 1.96 -1.149 0.328
10 C13 C C10 N Y N 0 1.34 0.049 0.098
11 C14 C C11 N N N 0 -0.097 0.25 -0.115
12 C17 C C12 N Y N 0 -1.936 1.681 -0.568
13 C19 C C13 N Y N 0 -3.676 2.949 -1.411
14 C20 C C14 N Y N 0 -4.616 2.144 -0.806
15 C21 C C15 N Y N 0 -4.189 1.048 -0.048
16 C22 C C16 N Y N 0 -2.817 0.819 0.068
17 C23 C C17 N Y N 0 -5.168 0.156 0.619
18 C24 C C18 N Y N 0 -6.015 0.445 1.652
19 C27 C C19 N Y N 0 -5.472 -1.257 0.326
20 C28 C C20 N Y N 0 -4.853 -2.115 -0.713
21 C29 C C21 N Y N 0 -4.53 -1.581 -1.959
22 C30 C C22 N Y N 0 -3.949 -2.381 -2.921
23 C31 C C23 N Y N 0 -3.687 -3.715 -2.649
24 C33 C C24 N Y N 0 -4.006 -4.25 -1.412
25 C34 C C25 N Y N 0 -4.587 -3.457 -0.444
26 C35 C C26 N N N 0 -6.148 1.766 2.365
27 C36 C C27 N N N 0 -7.58 2.284 2.216
28 C37 C C28 N N N 0 -5.826 1.579 3.849
29 C38 C C29 N Y N 0 4.402 -1.881 0.744
30 C39 C C30 N Y N 0 4.251 -2.81 1.772
31 C40 C C31 N Y N 0 5.243 -3.737 2.012
32 C41 C C32 N Y N 0 6.391 -3.746 1.232
33 C43 C C33 N N N 0 8.522 -4.613 0.631
34 N01 N N1 N N N 0 4.587 2.599 -0.033
35 C44 C C34 N Y N 0 6.544 -2.822 0.208
36 C45 C C35 N Y N 0 5.552 -1.896 -0.041
37 F32 F F1 N N N 0 -3.118 -4.495 -3.594
38 N09 N N2 N Y N 0 2.301 1.031 0.102
39 N16 N N3 N N N 0 -0.564 1.466 -0.462
40 N18 N N4 N Y N 0 -2.386 2.704 -1.281
41 N26 N N5 N Y N 0 -6.407 -1.592 1.181
42 O04 O O1 N N N 0 5.322 5.118 -1.776
43 O06 O O2 N N N 0 3.959 5.622 0.307
44 O15 O O3 N N N 0 -0.868 -0.682 0.021
45 O25 O O4 N Y N 0 -6.703 -0.674 1.908
46 O42 O O5 N N N 0 7.367 -4.661 1.472
47 H1 H H1 N N N 0 5.112 1.278 1.483
48 H11 H H2 N N N 0 5.552 0.763 -0.16
49 H021 H H3 N N N 0 3.99 2.089 -2.0
50 H022 H H4 N N N 0 5.685 2.65 -1.843
51 H031 H H5 N N N 0 3.588 4.326 -2.598
52 H051 H H6 N N N 0 2.336 4.855 -0.737
53 H071 H H7 N N N 0 3.291 3.435 1.449
54 H081 H H8 N N N 0 1.222 2.798 0.406
55 H082 H H9 N N N 0 1.982 2.643 -1.194
56 H121 H H10 N N N 0 1.485 -2.117 0.381
57 H191 H H11 N N N 0 -3.999 3.794 -2.002
58 H201 H H12 N N N 0 -5.67 2.353 -0.919
59 H221 H H13 N N N 0 -2.447 -0.017 0.644
60 H291 H H14 N N N 0 -4.735 -0.542 -2.172
61 H301 H H15 N N N 0 -3.698 -1.968 -3.887
62 H331 H H16 N N N 0 -3.801 -5.29 -1.205
63 H341 H H17 N N N 0 -4.832 -3.874 0.521
64 H351 H H18 N N N 0 -5.454 2.485 1.931
65 H363 H H19 N N N 0 -8.274 1.565 2.651
66 H362 H H20 N N N 0 -7.676 3.239 2.731
67 H361 H H21 N N N 0 -7.809 2.417 1.158
68 H372 H H22 N N N 0 -4.806 1.21 3.956
69 H371 H H24 N N N 0 -6.52 0.86 4.284
70 H373 H H23 N N N 0 -5.922 2.534 4.365
71 H391 H H25 N N N 0 3.358 -2.803 2.38
72 H401 H H26 N N N 0 5.127 -4.458 2.809
73 H432 H H27 N N N 0 8.223 -4.768 -0.405
74 H431 H H28 N N N 0 9.002 -3.639 0.728
75 H433 H H29 N N N 0 9.221 -5.394 0.929
76 H441 H H30 N N N 0 7.438 -2.831 -0.398
77 H451 H H31 N N N 0 5.67 -1.18 -0.841
78 H161 H H33 N N N 0 0.056 2.191 -0.637
79 H041 H H34 N N N 0 5.915 4.93 -2.516
80 H061 H H35 N N N 0 4.043 6.456 -0.175