Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C8P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 115


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O25 O O25 N N N 0 2.875 0.469 2.109
2 C25 C C25 N N N 0 2.472 0.508 0.965
3 C26 C C26 N N N 0 3.082 -0.389 -0.08
4 C27 C C27 N N N 0 4.18 -1.243 0.559
5 C28 C C28 N N N 0 4.8 -2.154 -0.503
6 C29 C C29 N N N 0 5.897 -3.007 0.136
7 C30 C C30 N N N 0 6.517 -3.919 -0.925
8 C31 C C31 N N N 0 7.614 -4.772 -0.287
9 C32 C C32 N N N 0 8.234 -5.683 -1.348
10 CI C CI N Y N 0 9.315 -6.524 -0.719
11 CJ2 C CJ2 N Y N 0 9.004 -7.756 -0.175
12 CK2 C CK2 N Y N 0 9.995 -8.528 0.402
13 CL C CL N Y N 0 11.298 -8.067 0.434
14 CK1 C CK1 N Y N 0 11.61 -6.835 -0.11
15 CJ1 C CJ1 N Y N 0 10.619 -6.066 -0.691
16 N N N N N N 0 1.474 1.351 0.631
17 C17 C C17 S N N 0 0.877 2.219 1.649
18 C18 C C18 N N N 0 1.711 3.494 1.785
19 O18 O O18 N N N 0 1.655 4.233 0.562
20 C19 C C19 S N N 0 2.405 5.449 0.583
21 C20 C C20 R N N 0 2.078 6.271 -0.666
22 O20 O O20 N N N 0 0.673 6.525 -0.717
23 C21 C C21 S N N 0 2.501 5.485 -1.911
24 O21 O O21 N N N 0 2.268 6.276 -3.078
25 C22 C C22 R N N 0 3.993 5.152 -1.808
26 O22 O O22 N N N 0 4.753 6.362 -1.793
27 C23 C C23 R N N 0 4.246 4.372 -0.515
28 C24 C C24 N N N 0 5.742 4.088 -0.375
29 O24 O O24 N N N 0 5.965 3.262 0.77
30 O19 O O19 N N N 0 3.802 5.147 0.601
31 C16 C C16 S N N 0 -0.55 2.584 1.233
32 O16 O O16 N N N 0 -1.087 3.532 2.158
33 C15 C C15 R N N 0 -1.419 1.325 1.231
34 O15 O O15 N N N 0 -0.881 0.377 0.306
35 C14 C C14 N N N 0 -2.845 1.69 0.815
36 C13 C C13 N N N 0 -3.742 0.456 0.932
37 C12 C C12 N N N 0 -5.169 0.821 0.517
38 C11 C C11 N N N 0 -6.066 -0.413 0.634
39 C10 C C10 N N N 0 -7.492 -0.047 0.219
40 C9 C C9 N N N 0 -8.389 -1.281 0.336
41 C8 C C8 N N N 0 -9.816 -0.916 -0.079
42 C7 C C7 N N N 0 -10.713 -2.15 0.038
43 C6 C C6 N N N 0 -12.139 -1.785 -0.377
44 C5 C C5 N N N 0 -13.036 -3.019 -0.26
45 C4 C C4 N N N 0 -14.463 -2.653 -0.675
46 C3 C C3 N N N 0 -15.36 -3.887 -0.558
47 C2 C C2 N N N 0 -16.787 -3.522 -0.974
48 C1 C C1 N N N 0 -17.684 -4.756 -0.857
49 H26 H H26 N N N 0 2.312 -1.039 -0.496
50 H26A H H26A N N N 0 3.512 0.22 -0.875
51 H27 H H27 N N N 0 4.95 -0.593 0.974
52 H27A H H27A N N N 0 3.75 -1.852 1.354
53 H28 H H28 N N N 0 4.03 -2.804 -0.919
54 H28A H H28A N N N 0 5.23 -1.545 -1.298
55 H29 H H29 N N N 0 6.667 -2.358 0.552
56 H29A H H29A N N N 0 5.467 -3.616 0.931
57 H30 H H30 N N N 0 5.747 -4.568 -1.341
58 H30A H H30A N N N 0 6.947 -3.31 -1.721
59 H31 H H31 N N N 0 8.384 -4.122 0.129
60 H31A H H31A N N N 0 7.185 -5.381 0.508
61 H32 H H32 N N N 0 7.464 -6.333 -1.764
62 H32A H H32A N N N 0 8.664 -5.075 -2.144
63 HJ2 H HJ2 N N N 0 7.986 -8.116 -0.201
64 HK2 H HK2 N N N 0 9.752 -9.49 0.827
65 HL H HL N N N 0 12.073 -8.669 0.886
66 HK1 H HK1 N N N 0 12.628 -6.475 -0.084
67 HJ1 H HJ1 N N N 0 10.863 -5.105 -1.12
68 HN H HN N N N 0 1.152 1.382 -0.283
69 H17 H H17 N N N 0 0.854 1.696 2.605
70 H18 H H18 N N N 0 1.312 4.104 2.596
71 H18A H H18A N N N 0 2.745 3.23 2.003
72 H19 H H19 N N N 0 2.145 6.021 1.473
73 H20 H H20 N N N 0 2.618 7.218 -0.631
74 HO20 H HO20 N N N 0 0.334 7.016 0.045
75 H21 H H21 N N N 0 1.924 4.563 -1.974
76 HO21 H HO21 N N N 0 1.343 6.53 -3.202
77 H22 H H22 N N N 0 4.291 4.546 -2.664
78 HO22 H HO22 N N N 0 4.637 6.909 -2.581
79 H23 H H23 N N N 0 3.698 3.431 -0.545
80 H24 H H24 N N N 0 6.1 3.575 -1.268
81 H24A H H24A N N N 0 6.281 5.028 -0.255
82 HO24 H HO24 N N N 0 6.894 3.04 0.92
83 H16 H H16 N N N 0 -0.537 3.019 0.234
84 HO16 H HO16 N N N 0 -1.059 3.241 3.08
85 H15 H H15 N N N 0 -1.431 0.89 2.23
86 HO15 H HO15 N N N 0 -0.84 0.698 -0.606
87 H14 H H14 N N N 0 -3.223 2.477 1.468
88 H14A H H14A N N N 0 -2.844 2.042 -0.216
89 H13 H H13 N N N 0 -3.364 -0.331 0.28
90 H13A H H13A N N N 0 -3.743 0.104 1.964
91 H12 H H12 N N N 0 -5.547 1.609 1.169
92 H12A H H12A N N N 0 -5.168 1.173 -0.514
93 H11 H H11 N N N 0 -5.688 -1.2 -0.018
94 H11A H H11A N N N 0 -6.067 -0.765 1.666
95 H10 H H10 N N N 0 -7.87 0.74 0.871
96 H10A H H10A N N N 0 -7.492 0.305 -0.812
97 H9 H H9 N N N 0 -8.011 -2.068 -0.316
98 H9A H H9A N N N 0 -8.39 -1.633 1.368
99 H8 H H8 N N N 0 -10.194 -0.129 0.573
100 H8A H H8A N N N 0 -9.815 -0.564 -1.111
101 H7 H H7 N N N 0 -10.335 -2.937 -0.614
102 H7A H H7A N N N 0 -10.714 -2.502 1.069
103 H6 H H6 N N N 0 -12.517 -0.997 0.275
104 H6A H H6A N N N 0 -12.139 -1.433 -1.409
105 H5 H H5 N N N 0 -12.658 -3.806 -0.913
106 H5A H H5A N N N 0 -13.037 -3.371 0.771
107 H4 H H4 N N N 0 -14.841 -1.866 -0.023
108 H4A H H4A N N N 0 -14.462 -2.301 -1.707
109 H3 H H3 N N N 0 -14.982 -4.674 -1.211
110 H3A H H3A N N N 0 -15.361 -4.239 0.473
111 H2 H H2 N N N 0 -17.165 -2.735 -0.321
112 H2A H H2A N N N 0 -16.786 -3.17 -2.005
113 H1 H H1 N N N 0 -18.7 -4.496 -1.152
114 H1A H H1A N N N 0 -17.306 -5.543 -1.509
115 H1B H H1B N N N 0 -17.684 -5.108 0.175