Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C1Z

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PD P P1 N N N 0 -3.065 5.911 -0.777
2 O1D O O1 N N N 0 -3.548 6.521 0.482
3 O1G O O4 N N N 0 8.398 -1.764 0.359
4 O2D O O2 N N N 0 -3.966 6.431 -2.006
5 O3D O O3 N N N 0 -1.53 6.331 -1.022
6 PG P P2 N N N 0 7.809 -1.558 -0.983
7 O2G O O5 N N N 0 8.696 -0.493 -1.801
8 O3G O O6 N N N 0 7.784 -2.958 -1.778
9 PB P P3 N N N 0 5.622 0.134 0.084
10 O1B O O7 N N N 0 6.199 0.085 1.446
11 O2B O O8 N N N 0 5.897 1.583 -0.563
12 O3B O O9 N N N 0 6.306 -1.001 -0.83
13 O3A O O10 N N N 0 4.035 -0.125 0.163
14 PA P P4 N N N 0 2.858 0.424 1.115
15 O1A O O11 N N N 0 2.955 -0.291 2.555
16 O2A O O12 N N N 0 3.0 1.888 1.28
17 O5' O O13 N N N 0 1.431 0.094 0.447
18 C5' C C1 N N N 0 0.191 0.545 0.999
19 C4' C C2 R N N 0 -0.964 0.058 0.121
20 O4' O O14 N N N 0 -1.114 -1.374 0.236
21 C3' C C3 S N N 0 -2.304 0.637 0.626
22 O3' O O15 N N N 0 -2.678 1.781 -0.145
23 C2' C C4 R N N 0 -3.314 -0.513 0.414
24 O2' O O16 N N N 0 -4.342 -0.114 -0.495
25 C1' C C5 R N N 0 -2.464 -1.65 -0.195
26 N9 N N1 N Y N 0 -2.908 -2.949 0.319
27 C8 C C6 N Y N 0 -2.418 -3.59 1.419
28 N7 N N2 N Y N 0 -3.049 -4.718 1.582
29 C5 C C7 N Y N 0 -3.97 -4.857 0.6
30 C6 C C8 N N N 0 -4.958 -5.884 0.257
31 O6 O O17 N N N 0 -5.072 -6.892 0.938
32 N1 N N3 N N N 0 -5.735 -5.693 -0.82
33 C2 C C9 N N N 0 -5.624 -4.612 -1.562
34 N2 N N4 N N N 0 -6.444 -4.472 -2.649
35 N3 N N5 N N N 0 -4.726 -3.629 -1.29
36 C4 C C10 N Y N 0 -3.887 -3.732 -0.211
37 PC P P5 N N N 0 -2.887 3.242 0.499
38 O1C O O18 N N N 0 -1.666 3.635 1.237
39 O2C O O19 N N N 0 -4.138 3.208 1.511
40 O3C O O20 N N N 0 -3.173 4.308 -0.673
41 H2 H H1 N N N 0 -3.948 7.39 -2.128
42 H3 H H2 N N N 0 -1.146 5.966 -1.831
43 H4 H H3 N N N 0 8.368 -0.309 -2.692
44 H5 H H4 N N N 0 8.657 -3.353 -1.906
45 H6 H H5 N N N 0 5.546 1.687 -1.458
46 H17 H H6 N N N 0 2.871 -1.253 2.522
47 H7 H H7 N N N 0 0.075 0.146 2.006
48 H8 H H8 N N N 0 0.185 1.634 1.036
49 H9 H H9 N N N 0 -0.796 0.342 -0.918
50 H10 H H10 N N N 0 -2.234 0.896 1.683
51 H11 H H11 N N N 0 -3.746 -0.823 1.365
52 H12 H H12 N N N 0 -5.004 -0.799 -0.665
53 H13 H H13 N N N 0 -2.527 -1.63 -1.283
54 H14 H H14 N N N 0 -1.629 -3.22 2.056
55 H15 H H15 N N N 0 -7.092 -5.163 -2.86
56 H16 H H16 N N N 0 -6.377 -3.683 -3.208
57 H1 H H17 N N N 0 -4.679 -2.849 -1.864
58 H18 H H18 N N N 0 -4.974 2.957 1.095