Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : BVV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -6.574 -0.718 1.151
2 C2 C C2 N Y N 0 -5.199 -0.609 1.154
3 C3 C C3 N Y N 0 -5.197 -0.429 -1.239
4 C4 C C4 N Y N 0 -6.571 -0.543 -1.256
5 C5 C C5 N Y N 0 -7.271 -0.688 -0.058
6 C6 C C6 N N N 0 -8.745 -0.811 -0.068
7 N1 N N1 N N N 0 -9.362 -1.511 0.882
8 N2 N N2 N N N 1 -9.456 -0.221 -1.027
9 N3 N N3 N Y N 0 -0.443 0.345 0.028
10 O1 O O1 N N N 0 -2.647 1.039 0.08
11 C7 C C7 N Y N 0 -4.511 -0.464 -0.038
12 C8 C C8 N N N 0 -3.009 -0.339 -0.027
13 C9 C C9 N Y N 0 -1.322 1.328 0.103
14 C10 C C10 N Y N 0 -0.913 2.656 0.207
15 C11 C C11 N Y N 0 0.423 2.954 0.231
16 C12 C C12 N Y N 0 0.86 0.581 0.047
17 C13 C C13 N Y N 0 1.342 1.899 0.15
18 C14 C C14 N Y N 0 3.074 0.587 0.049
19 C15 C C15 N Y N 0 4.478 0.125 0.013
20 N5 N N4 N Y N 0 1.974 -0.228 -0.015
21 C16 C C16 N Y N 0 5.52 1.052 0.086
22 N6 N N5 N N N 1 9.46 -0.418 -0.611
23 C18 C C17 N Y N 0 6.828 0.622 0.053
24 C20 C C18 N Y N 0 7.112 -0.741 -0.053
25 C19 C C19 N Y N 0 6.07 -1.668 -0.126
26 C17 C C20 N Y N 0 4.762 -1.238 -0.087
27 C21 C C21 N N N 0 8.516 -1.203 -0.094
28 N7 N N6 N N N 0 8.837 -2.403 0.386
29 H1 H H1 N N N 0 -7.11 -0.83 2.082
30 N4 N N7 N Y N 0 2.694 1.837 0.146
31 H2 H H2 N N N 0 -4.658 -0.636 2.088
32 H3 H H3 N N N 0 -4.654 -0.316 -2.166
33 H4 H H4 N N N 0 -7.106 -0.515 -2.194
34 H6 H H5 N N N 0 -8.845 -1.941 1.58
35 H5 H H6 N N N 0 -10.329 -1.592 0.875
36 H8 H H7 N N N 0 -9.007 0.29 -1.719
37 H10 H H8 N N N 0 -2.604 -0.75 -0.951
38 H9 H H9 N N N 0 -2.605 -0.888 0.823
39 H11 H H10 N N N 0 -1.647 3.446 0.267
40 H12 H H11 N N N 0 0.76 3.977 0.311
41 H13 H H12 N N N 0 1.978 -1.195 -0.09
42 H14 H H13 N N N 0 5.301 2.106 0.167
43 H16 H H14 N N N 0 7.634 1.339 0.11
44 H17 H H15 N N N 0 6.29 -2.722 -0.208
45 H20 H H19 N N N 0 9.758 -2.706 0.359
46 H15 H H16 N N N 0 3.957 -1.955 -0.143
47 H18 H H17 N N N 0 9.226 0.456 -0.961
48 H21 H H18 N N N 0 8.15 -2.974 0.763
49 H7 H H21 N N N 0 -10.422 -0.301 -1.034
50 H19 H H22 N N N 0 10.381 -0.721 -0.638