Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BOM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 0.499 -0.683 -9.215
2 C2 C C2 N N N 0 0.863 0.054 -8.047
3 C4 C C4 N N N 0 0.103 -0.495 -6.838
4 C7 C C7 N N N 0 0.493 0.294 -5.587
5 C10 C C10 N N N 0 -0.267 -0.255 -4.379
6 C13 C C13 N N N 0 0.122 0.534 -3.128
7 C16 C C16 N N N 0 -0.638 -0.014 -1.92
8 C19 C C19 N N N 0 -0.248 0.775 -0.669
9 C22 C C22 N N N 0 -1.009 0.225 0.538
10 C25 C C25 N N N 0 -0.619 1.015 1.789
11 C28 C C28 N N N 0 -1.368 0.474 2.979
12 C31 C C31 N N N 0 -0.7 -0.018 4.016
13 C33 C C33 N N N 0 -1.432 -0.547 5.178
14 C35 C C35 N N N 0 -0.767 -0.941 6.259
15 C37 C C37 N N N 0 0.72 -0.717 6.352
16 C39 C C39 N N N 0 1.043 0.028 7.648
17 C42 C C42 N N N 0 2.553 0.256 7.742
18 HO1 H HO1 N N N 0 1.0 -0.306 -9.951
19 H21 H 1H2 N N N 0 0.611 1.105 -8.187
20 H22 H 2H2 N N N 0 1.936 -0.042 -7.875
21 H41 H 1H4 N N N 0 0.355 -1.546 -6.698
22 H42 H 2H4 N N N 0 -0.969 -0.399 -7.009
23 H71 H 1H7 N N N 0 0.24 1.345 -5.728
24 H72 H 2H7 N N N 0 1.565 0.198 -5.416
25 H101 H 1H10 N N N 0 -0.015 -1.306 -4.238
26 H102 H 2H10 N N N 0 -1.339 -0.158 -4.55
27 H131 H 1H13 N N N 0 -0.13 1.585 -3.269
28 H132 H 2H13 N N N 0 1.194 0.438 -2.957
29 H161 H 1H16 N N N 0 -0.386 -1.065 -1.779
30 H162 H 2H16 N N N 0 -1.71 0.081 -2.091
31 H191 H 1H19 N N N 0 -0.501 1.826 -0.81
32 H192 H 2H19 N N N 0 0.823 0.678 -0.498
33 H221 H 1H22 N N N 0 -0.757 -0.825 0.679
34 H222 H 2H22 N N N 0 -2.081 0.322 0.367
35 H251 H 1H25 N N N 0 -0.871 2.066 1.648
36 H252 H 2H25 N N N 0 0.452 0.919 1.96
37 H281 H 1H28 N N N 0 -2.448 0.486 2.989
38 H311 H 1H31 N N N 0 0.379 -0.031 4.007
39 H331 H 1H33 N N N 0 -2.51 -0.615 5.153
40 H351 H 1H35 N N N 0 -1.292 -1.422 7.071
41 H371 H 1H37 N N N 0 1.052 -0.125 5.499
42 H372 H 2H37 N N N 0 1.233 -1.679 6.348
43 H391 H 1H39 N N N 0 0.711 -0.563 8.5
44 H392 H 2H39 N N N 0 0.53 0.99 7.651
45 H421 H 1H42 N N N 0 2.784 0.787 8.665
46 H422 H 2H42 N N N 0 3.066 -0.705 7.738
47 H423 H 3H42 N N N 0 2.885 0.848 6.889