Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BMP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -1.002 0.14 -4.215
2 OP1 O O1P N N N 0 -1.706 -1.122 -3.898
3 OP2 O O2P N N N 0 -2.046 1.194 -4.839
4 OP3 O O3P N N Y 0 0.168 -0.15 -5.28
5 O5' O O5* N N N 0 -0.364 0.75 -2.869
6 C5' C C5* N N N 0 0.548 -0.226 -2.365
7 C4' C C4* R N N 0 1.194 0.293 -1.079
8 O4' O O4* N N N 0 0.186 0.522 -0.066
9 C3' C C3* S N N 0 2.128 -0.773 -0.467
10 O3' O O3* N N N 0 3.487 -0.512 -0.823
11 C2' C C2* R N N 0 1.929 -0.622 1.057
12 O2' O O2* N N N 0 3.16 -0.266 1.689
13 C1' C C1* R N N 0 0.898 0.519 1.189
14 N1 N N1 N N N 0 -0.02 0.251 2.298
15 C2 C C2 N N N 0 -0.781 -0.858 2.283
16 O2 O O2 N N N 0 -0.697 -1.628 1.346
17 N3 N N3 N N N 0 -1.632 -1.128 3.289
18 C4 C C4 N N N 0 -1.741 -0.288 4.337
19 O4 O O4 N N N 0 -2.514 -0.537 5.246
20 C5 C C5 N N N 0 -0.957 0.878 4.375
21 C6 C C6 N N N 0 -0.095 1.13 3.349
22 O1 O O1 N N N 0 0.669 2.243 3.361
23 HOP2 H 2HOP N N N 0 -2.405 0.79 -5.642
24 HOP3 H 3HOP N N N 0 0.6 0.695 -5.459
25 H5' H 1H5* N N N 0 1.322 -0.418 -3.108
26 H5'' H 2H5* N N N 0 0.011 -1.151 -2.153
27 H4' H H4* N N N 0 1.747 1.211 -1.277
28 H3' H H3* N N N 0 1.834 -1.771 -0.794
29 HO3' H *HO3 N N Y 0 4.025 -1.189 -0.39
30 H2' H H2* N N N 0 1.534 -1.544 1.483
31 HO2' H *HO2 N N N 0 3.78 -0.989 1.521
32 H1' H H1* N N N 0 1.405 1.472 1.34
33 HN3 H HN3 N N N 0 -2.172 -1.933 3.259
34 H51 H 1H5 N N N 0 -1.032 1.562 5.207
35 HO1 H HO1 N N N 0 0.456 2.72 4.174