Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer
Collapse Download Links
Collapse Related compounds
  • IDR (Stereoisomer)
  • LGU (Stereoisomer)
  • MAV (Stereoisomer)
  • GTR (Stereoisomer)
  • BEM (Stereoisomer)
  • X0X (Stereoisomer)
  • X1X (Stereoisomer)
  • GCU (Stereoisomer)
  • ADA (Stereoisomer)
Collapse 3D-Views
Collapse PDB Links

PDBeChem : Atoms of Molecule

 Molecule : BDP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 23


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 -1.248 1.252 0.387
2 C2 C C2 R N N 0 -1.851 -0.001 -0.255
3 C3 C C3 S N N 0 -1.037 -1.226 0.173
4 C4 C C4 S N N 0 0.427 -1.017 -0.224
5 C5 C C5 S N N 0 0.942 0.275 0.417
6 C6 C C6 N N N 0 2.364 0.519 -0.016
7 O2 O O2 N N N 0 -3.205 -0.153 0.174
8 O3 O O3 N N N 0 -1.548 -2.39 -0.48
9 O4 O O4 N N N 0 1.209 -2.121 0.235
10 O5 O O5 N N N 0 0.123 1.37 0.002
11 O6A O O6A N N N 0 2.632 1.482 -0.695
12 O1 O O1 N N Y 0 -1.968 2.406 -0.053
13 O6B O O6B N N N 0 3.334 -0.333 0.352
14 H1 H H1 N N N 0 -1.316 1.173 1.472
15 H2 H H2 N N N 0 -1.82 0.096 -1.341
16 H3 H H3 N N N 0 -1.108 -1.351 1.253
17 H4 H H4 N N N 0 0.504 -0.941 -1.308
18 H5 H H5 N N N 0 0.903 0.183 1.503
19 HO2 H HB N N Y 0 -3.778 0.591 -0.06
20 HO3 H HC N N Y 0 -2.474 -2.579 -0.279
21 HO4 H HD N N Y 0 2.149 -2.055 0.018
22 HO1 H HA N N Y 0 -1.64 3.237 0.315
23 HO6B H H6B N N N 0 4.231 -0.135 0.05