Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : B61

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2 O O2 N N N 0 0.588 -2.646 -0.089
2 C1 C C1 N N N 0 1.259 -1.628 -0.054
3 C4 C C4 N N N 0 0.646 -0.359 -0.062
4 C7 C C7 N N N 0 1.465 0.779 -0.026
5 N6 N N6 N N N 0 2.788 0.646 0.024
6 C5 C C5 N N N 0 3.349 -0.547 0.035
7 N8 N N8 N N N 0 4.713 -0.641 0.087
8 N3 N N3 N N N 0 2.608 -1.688 0.0
9 N9 N N9 N N N 0 -0.71 -0.222 -0.095
10 C10 C C10 N N N 0 -1.267 0.902 -0.39
11 C17 C C17 N N N 0 -2.77 1.001 -0.398
12 C23 C C23 N N N 0 -3.37 -0.306 0.123
13 O24 O O24 N N N 0 -2.956 -1.387 -0.715
14 C25 C C25 N N N 0 -2.886 -0.555 1.553
15 C26 C C26 N N N 0 -4.897 -0.207 0.111
16 C11 C C11 N N N 0 -0.445 2.12 -0.727
17 N12 N N12 N N N 0 0.859 2.021 -0.053
18 C13 C C13 N N N 0 1.488 3.19 0.566
19 HN8 H HN8 N N N 0 5.254 0.163 0.116
20 HN8A H HN8A N N N 0 5.14 -1.513 0.095
21 H17 H H17 N N N 0 -3.083 1.825 0.243
22 H17A H H17A N N N 0 -3.117 1.18 -1.416
23 HO24 H HO24 N N N 0 -3.3 -2.249 -0.444
24 H25 H H25 N N N 0 -3.202 0.269 2.192
25 H25A H H25A N N N 0 -3.314 -1.487 1.924
26 H25B H H25B N N N 0 -1.798 -0.626 1.561
27 H26 H H26 N N N 0 -5.247 -0.114 -0.917
28 H26A H H26A N N N 0 -5.323 -1.105 0.559
29 H26B H H26B N N N 0 -5.209 0.667 0.682
30 H11 H H11 N N N 0 -0.295 2.172 -1.806
31 H13 H H13 N N N 0 1.17 3.267 1.606
32 H13A H H13A N N N 0 2.572 3.084 0.525
33 H13B H H13B N N N 0 1.191 4.09 0.028
34 H16 H H16 N N N 0 3.051 -2.551 0.01
35 H171 H H171 N N N 0 -0.965 3.016 -0.387