Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : AMI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -0.224 -1.245 -0.326
2 C2 C C2 R N N 0 1.275 -0.892 -0.12
3 C3 C C3 R N N 0 1.647 0.038 -1.283
4 C4 C C4 R N N 0 0.356 0.767 -1.682
5 C5 C C5 R N N 0 -0.815 -0.031 -1.096
6 C6 C C6 N N N 0 -1.722 -0.525 -2.225
7 C7 C C7 N N N 0 0.099 -0.363 1.722
8 C8 C C8 N N N 0 0.667 1.105 3.611
9 C9 C C9 N N N 0 -1.559 -0.107 3.518
10 N2 N N2 N N N 0 1.238 -0.134 1.142
11 N7 N N7 N N N 0 -0.256 0.198 2.924
12 O3 O O3 N N N 0 2.141 -0.725 -2.384
13 O4 O O4 N N N 0 0.36 2.092 -1.147
14 O6 O O6 N N N 0 -2.257 0.595 -2.932
15 O7 O O7 N N N 0 -0.698 -1.208 1.04
16 H1 H H1 N N N 0 -0.392 -2.198 -0.828
17 H2 H H2 N N N 0 1.916 -1.772 -0.065
18 H3 H H3 N N N 0 2.399 0.758 -0.96
19 H4 H H4 N N N 0 0.272 0.806 -2.768
20 H5 H H5 N N N 0 -1.386 0.597 -0.412
21 H61 H 1H6 N N N 0 -1.143 -1.144 -2.911
22 H62 H 2H6 N N N 0 -2.538 -1.113 -1.805
23 H81 H 1H8 N N N 0 0.214 1.448 4.541
24 H82 H 2H8 N N N 0 1.595 0.579 3.831
25 H83 H 3H8 N N N 0 0.878 1.962 2.971
26 H91 H 1H9 N N N 0 -1.662 0.426 4.463
27 H92 H 2H9 N N N 0 -2.351 0.202 2.837
28 H93 H 3H9 N N N 0 -1.634 -1.18 3.697
29 HO3 H HO3 N N N 0 2.36 -0.096 -3.085
30 HO4 H HO4 N N N 0 1.119 2.548 -1.536
31 HO6 H HO6 N N N 0 -2.821 0.241 -3.633