Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ADP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PB P PB N N N 0 1.162 -0.221 -5.685
2 O1B O O1B N N N 0 1.725 1.133 -5.492
3 O2B O O2B N N N 0 2.19 -1.112 -6.546
4 O3B O O3B N N N 0 -0.24 -0.113 -6.467
5 PA P PA S N N 0 -0.105 0.025 -3.446
6 O1A O O1A N N N 0 0.476 1.376 -3.288
7 O2A O O2A N N N 0 -1.487 0.129 -4.266
8 O3A O O3A N N N 0 0.925 -0.913 -4.25
9 O5' O O5* N N N 0 -0.389 -0.609 -1.994
10 C5' C C5* N N N 0 -1.307 0.264 -1.333
11 C4' C C4* R N N 0 -1.62 -0.284 0.059
12 O4' O O4* N N N 0 -0.417 -0.348 0.857
13 C3' C C3* S N N 0 -2.55 0.683 0.825
14 O3' O O3* N N N 0 -3.907 0.245 0.739
15 C2' C C2* R N N 0 -2.047 0.611 2.286
16 O2' O O2* N N N 0 -3.08 0.129 3.148
17 C1' C C1* R N N 0 -0.871 -0.388 2.227
18 N9 N N9 N Y N 0 0.201 0.031 3.132
19 C8 C C8 N Y N 0 1.231 0.87 2.827
20 N7 N N7 N Y N 0 2.0 1.027 3.865
21 C5 C C5 N Y N 0 1.509 0.305 4.902
22 C6 C C6 N Y N 0 1.91 0.087 6.231
23 N6 N N6 N N N 0 3.044 0.697 6.738
24 N1 N N1 N Y N 0 1.171 -0.714 6.991
25 C2 C C2 N Y N 0 0.088 -1.3 6.516
26 N3 N N3 N Y N 0 -0.321 -1.13 5.277
27 C4 C C4 N Y N 0 0.353 -0.346 4.442
28 HOB2 H 2HOB N N N 0 2.304 -0.664 -7.396
29 HOB3 H 3HOB N N N 0 -0.572 -1.016 -6.571
30 HOA2 H 2HOA N N N 0 -1.833 -0.77 -4.346
31 H5'1 H 1H5* N N N 0 -2.227 0.33 -1.913
32 H5'2 H 2H5* N N N 0 -0.862 1.255 -1.242
33 H4' H H4* N N N 0 -2.078 -1.27 -0.015
34 H3' H H3* N N N 0 -2.451 1.696 0.435
35 HO3' H *HO3 N N N 0 -4.439 0.884 1.233
36 H2' H H2* N N N 0 -1.699 1.589 2.618
37 HO2' H *HO2 N N N 0 -3.807 0.764 3.094
38 H1' H H1* N N N 0 -1.212 -1.391 2.485
39 H8 H H8 N N N 0 1.387 1.335 1.865
40 HN61 H 1HN6 N N N 0 3.308 0.542 7.658
41 HN62 H 2HN6 N N N 0 3.577 1.277 6.172
42 H2 H H2 N N N 0 -0.482 -1.944 7.169