Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A5P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 27


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.469 -0.647 4.232
2 O1 O O1 N N N 0 -0.107 -0.273 5.485
3 C2 C C2 R N N 0 -0.329 -0.011 3.093
4 O2 O O2 N N N 0 -0.298 1.411 3.226
5 C3 C C3 S N N 0 0.288 -0.411 1.752
6 O3 O O3 N N N 0 1.642 0.043 1.696
7 C4 C C4 R N N 0 -0.51 0.225 0.612
8 O4 O O4 N N N 0 -1.863 -0.229 0.668
9 C5 C C5 N N N 0 0.107 -0.174 -0.728
10 O5 O O5 N N N 0 -0.638 0.419 -1.792
11 P P P N N N 0 0.062 -0.041 -3.166
12 O1P O O1P N N N 0 0.033 -1.517 -3.265
13 O2P O O2P N N N 0 -0.731 0.595 -4.414
14 O3P O O3P N N N 0 1.589 0.467 -3.186
15 H11 H H11 N N N 0 1.502 -0.3 4.19
16 H12 H H12 N N N 0 0.446 -1.732 4.131
17 HO1 H HO1 N N N 0 0.425 -0.694 6.174
18 HC2 H HC2 N N N 0 -1.361 -0.358 3.135
19 HO2 H HO2 N N N 0 0.63 1.676 3.184
20 HC3 H HC3 N N N 0 0.265 -1.496 1.65
21 HO3 H HO3 N N N 0 1.617 1.005 1.789
22 HC4 H HC4 N N N 0 -0.487 1.31 0.714
23 HO4 H HO4 N N N 0 -1.839 -1.192 0.575
24 H51 H H51 N N N 0 1.139 0.172 -0.771
25 H52 H H52 N N N 0 0.084 -1.259 -0.83
26 HOP2 H 2HOP N N N 0 -0.279 0.296 -5.215
27 HOP3 H 3HOP N N N 0 1.564 1.432 -3.12