Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 93O

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -3.126 -0.796 2.447
2 C2 C C2 N Y N 0 -2.799 -0.225 1.216
3 C3 C C3 N Y N 0 -1.515 0.331 1.043
4 C4 C C4 N Y N 0 -0.622 0.281 2.134
5 C5 C C5 N Y N 0 -1.045 -0.313 3.323
6 C6 C C6 N N N 0 -0.102 -0.375 4.497
7 C8 C C7 N N N 0 3.062 0.692 1.502
8 C9 C C8 N N N 0 4.066 -0.319 1.012
9 C11 C C9 N Y N 0 5.921 -0.977 -0.412
10 C14 C C10 N Y N 0 7.773 -2.832 -1.306
11 C15 C C11 N Y N 0 6.866 -3.183 -0.322
12 C16 C C12 N Y N 0 5.94 -2.264 0.127
13 C17 C C13 N Y N 0 -1.118 0.949 -0.241
14 C18 C C14 N Y N 0 -0.842 2.316 -0.306
15 C19 C C15 N Y N 0 -0.472 2.885 -1.506
16 C20 C C16 N Y N 0 -0.373 2.105 -2.644
17 O4 O O1 N N N 0 -4.543 0.734 -0.002
18 C23 C C17 N N N 0 -3.78 -0.205 0.115
19 O5 O O2 N N N 0 -3.831 -1.227 -0.762
20 C24 C C18 N N N 0 -4.821 -1.14 -1.82
21 C25 C C19 N N N 0 -4.728 -2.381 -2.709
22 O6 O O3 N N N 0 -5.087 -3.538 -1.95
23 C26 C C20 N N N 0 -5.033 -4.759 -2.691
24 C22 C C21 N Y N 0 -1.011 0.166 -1.391
25 C21 C C22 N Y N 0 -0.645 0.749 -2.587
26 N1 N N1 N N N 1 -0.18 4.334 -1.577
27 O3 O O4 N N N -1 -0.266 5.023 -0.576
28 O2 O O5 N N N 0 0.147 4.839 -2.636
29 N N N2 N Y N 0 -2.256 -0.82 3.436
30 C C C23 N N N 0 -4.496 -1.39 2.649
31 C7 C C24 N N N 0 0.736 0.845 2.018
32 O O O6 N N N 0 0.937 2.007 2.307
33 O1 O O7 N N N 0 1.753 0.07 1.592
34 C10 C C25 N N N 0 4.937 0.015 0.069
35 C13 C C26 N Y N 0 7.756 -1.559 -1.848
36 C12 C C27 N Y N 0 6.839 -0.629 -1.403
37 H1 H H1 N N N 0 -0.225 0.519 5.109
38 H2 H H2 N N N 0 -0.325 -1.258 5.096
39 H3 H H3 N N N 0 0.925 -0.43 4.136
40 H4 H H4 N N N 0 3.361 1.053 2.486
41 H5 H H5 N N N 0 3.02 1.53 0.806
42 H6 H H6 N N N 0 4.076 -1.316 1.427
43 H7 H H7 N N N 0 8.493 -3.556 -1.657
44 H8 H H8 N N N 0 6.882 -4.18 0.094
45 H9 H H9 N N N 0 5.233 -2.539 0.895
46 H10 H H10 N N N 0 -0.919 2.926 0.582
47 H11 H H11 N N N 0 -0.088 2.556 -3.583
48 H12 H H12 N N N 0 -5.817 -1.08 -1.382
49 H13 H H13 N N N 0 -4.634 -0.249 -2.42
50 H14 H H14 N N N 0 -5.409 -2.275 -3.553
51 H15 H H15 N N N 0 -3.708 -2.49 -3.076
52 H16 H H16 N N N 0 -5.72 -4.702 -3.536
53 H20 H H20 N N N 0 -0.567 0.146 -3.479
54 H17 H H17 N N N 0 -4.018 -4.916 -3.059
55 H18 H H18 N N N 0 -5.319 -5.589 -2.045
56 H19 H H19 N N N 0 -1.218 -0.893 -1.346
57 H24 H H24 N N N 0 4.927 1.012 -0.346
58 H21 H H21 N N N 0 -5.173 -0.622 3.024
59 H22 H H22 N N N 0 -4.87 -1.772 1.699
60 H23 H H23 N N N 0 -4.436 -2.205 3.37
61 H25 H H25 N N N 0 8.467 -1.291 -2.615
62 H26 H H26 N N N 0 6.832 0.367 -1.822