Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 8VJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C29 C C29 N N N 0 8.113 0.087 0.495
2 N28 N N28 N N N 0 6.705 0.293 0.131
3 C30 C C30 N N N 0 6.589 0.919 -1.193
4 C27 C C27 N N N 0 5.957 -0.971 0.184
5 C26 C C26 N Y N 0 2.546 -0.404 -1.33
6 C25 C C25 N Y N 0 3.898 -0.662 -1.204
7 C24 C C24 N Y N 0 4.483 -0.689 0.048
8 C23 C C23 N Y N 0 3.718 -0.458 1.177
9 C22 C C22 N Y N 0 2.367 -0.199 1.056
10 C21 C C21 N Y N 0 1.777 -0.172 -0.2
11 O12 O O12 N N N 0 0.447 0.082 -0.322
12 C11 C C11 N N N 0 -0.283 0.311 0.885
13 C10 C C10 N Y N 0 -3.952 -0.233 0.183
14 C09 C C09 N Y N 0 -2.602 -0.47 0.49
15 C08 C C08 N Y N 0 -1.73 0.573 0.555
16 C07 C C07 N Y N 0 -2.154 1.879 0.322
17 C06 C C06 N Y N 0 -3.455 2.147 0.021
18 C05 C C05 N Y N 0 -4.381 1.096 -0.055
19 C04 C C04 N Y N 0 -5.736 1.335 -0.364
20 C03 C C03 N Y N 0 -6.583 0.269 -0.422
21 C02 C C02 N Y N 0 -6.097 -1.023 -0.176
22 N02 N N02 N N N 0 -6.97 -2.099 -0.239
23 N01 N N01 N Y N 0 -4.829 -1.241 0.106
24 H291 H H291 N N N 0 8.643 1.038 0.448
25 H292 H H292 N N N 0 8.172 -0.312 1.507
26 H293 H H293 N N N 0 8.569 -0.617 -0.201
27 H301 H H301 N N N 0 7.052 0.275 -1.941
28 H302 H H302 N N N 0 5.536 1.06 -1.437
29 H303 H H303 N N N 0 7.092 1.885 -1.183
30 H271 H H271 N N N 0 6.28 -1.618 -0.632
31 H272 H H272 N N N 0 6.147 -1.466 1.136
32 H26 H H26 N N N 0 2.09 -0.378 -2.309
33 H25 H H25 N N N 0 4.497 -0.842 -2.084
34 H23 H H23 N N N 0 4.178 -0.479 2.154
35 H22 H H22 N N N 0 1.77 -0.02 1.938
36 H111 H H111 N N N 0 -0.21 -0.567 1.527
37 H112 H H112 N N N 0 0.134 1.175 1.403
38 H09 H H09 N N N 0 -2.257 -1.477 0.675
39 H07 H H07 N N N 0 -1.442 2.689 0.38
40 H06 H H06 N N N 0 -3.772 3.164 -0.158
41 H04 H H04 N N N 0 -6.093 2.337 -0.549
42 H03 H H03 N N N 0 -7.626 0.419 -0.656
43 H021 H H021 N N N 0 -7.906 -1.952 -0.45
44 H022 H H022 N N N 0 -6.647 -2.997 -0.071