Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6GP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 -0.259 0.271 0.092
2 C2 C C2 R N N 0 -1.064 1.532 -0.233
3 O2 O O2 N N N 0 -0.446 2.665 0.38
4 C3 C C3 S N N 0 -2.489 1.368 0.308
5 O3 O O3 N N N 0 -3.295 2.47 -0.114
6 C4 C C4 S N N 0 -3.074 0.062 -0.24
7 O4 O O4 N N N 0 -4.344 -0.187 0.366
8 C5 C C5 R N N 0 -2.118 -1.088 0.084
9 O5 O O5 N N N 0 -0.857 -0.859 -0.541
10 C6 C C6 N N N 0 -2.71 -2.401 -0.431
11 O6 O O6 N N N 0 -1.881 -3.491 -0.022
12 N1 N N1 N N N 0 1.114 0.431 -0.392
13 C7 C C7 N N N 0 2.14 -0.099 0.302
14 C9 C C9 N N N 0 5.926 -0.307 0.021
15 O7 O O7 N N N 0 1.926 -0.71 1.329
16 C8 C C8 N N N 0 3.541 0.064 -0.192
17 O8 O O8 N N N 0 3.754 0.675 -1.218
18 O9 O O9 N N N 0 4.565 -0.466 0.501
19 H1 H H1 N N N 0 -0.247 0.117 1.171
20 H2 H H2 N N N 0 -1.099 1.675 -1.313
21 HO2 H HO2 N N Y 0 0.446 2.73 0.011
22 H3 H H3 N N N 0 -2.465 1.329 1.397
23 HO3 H HO3 N N Y 0 -2.891 3.268 0.252
24 H4 H H4 N N N 0 -3.195 0.142 -1.32
25 HO4 H HO4 N N Y 0 -4.914 0.56 0.137
26 H5 H H5 N N N 0 -1.98 -1.151 1.164
27 H61 H H61 N N N 0 -3.712 -2.533 -0.021
28 H62 H H62 N N N 0 -2.763 -2.373 -1.519
29 HO6 H HO6 N N Y 0 -2.289 -4.297 -0.366
30 HN1 H HN1 N N N 0 1.285 0.92 -1.213
31 H91 H H91 N N N 0 6.169 0.754 -0.038
32 H92 H H92 N N N 0 6.613 -0.799 0.709
33 H93 H H93 N N N 0 6.017 -0.756 -0.968