Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 6G8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 87


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 R N N 0 6.006 0.201 -0.777
2 C3 C C2 N N N 0 4.527 -0.144 -0.456
3 C4 C C3 R N N 0 4.431 -1.637 -0.833
4 C6 C C4 N N N 0 6.723 -1.116 -0.388
5 C11 C C5 N Y N 0 -0.137 -1.757 0.88
6 C13 C C6 N Y N 0 -1.751 -0.353 -0.194
7 C16 C C7 N Y N 0 -1.104 -2.189 1.793
8 C17 C C8 N N N 0 6.137 -3.458 -1.081
9 C19 C C9 N N N 0 7.59 -3.855 -1.12
10 C21 C C10 N N N 0 8.096 -4.795 -0.024
11 C31 C C14 S N N 0 8.182 5.574 0.658
12 C25 C C11 N N N 0 -0.738 -3.183 2.864
13 C26 C C12 N N N 0 7.571 2.011 -0.321
14 C30 C C13 N N N 0 9.59 4.957 0.59
15 C32 C C15 N N N 0 7.221 4.435 0.245
16 N1 N N1 N N N 0 6.476 1.317 0.046
17 N5 N N2 N N N 0 5.794 -2.186 -0.794
18 C7 C C16 N N N 0 3.545 -2.372 0.175
19 N8 N N3 N N N 0 2.177 -1.852 0.094
20 C9 C C17 N N N 0 1.241 -2.28 0.963
21 O10 O O1 N N N 0 1.53 -3.098 1.815
22 C12 C C18 N Y N 0 -0.476 -0.834 -0.114
23 C14 C C19 N Y N 0 -2.72 -0.785 0.719
24 C15 C C20 N Y N 0 -2.381 -1.709 1.713
25 O18 O O2 N N N 0 5.277 -4.282 -1.307
26 C20 C C21 N N N 0 7.915 -5.313 -1.452
27 O27 O O3 N N N 0 8.169 1.711 -1.332
28 C28 C C22 S N N 0 8.054 3.16 0.526
29 N29 N N4 N N N 0 9.43 3.559 0.133
30 F33 F F1 N N N 0 8.077 6.646 -0.235
31 C34 C C23 N N N 0 -4.058 -0.282 0.635
32 C35 C C24 N N N 0 -5.155 0.13 0.566
33 C36 C C25 N Y N 0 -6.493 0.634 0.483
34 C37 C C26 N Y N 0 -6.837 1.552 -0.513
35 C38 C C27 N Y N 0 -8.128 2.033 -0.587
36 C39 C C28 N Y N 0 -9.081 1.608 0.321
37 C40 C C29 N Y N 0 -8.748 0.699 1.31
38 C41 C C30 N Y N 0 -7.463 0.204 1.393
39 C42 C C31 N N N 0 -10.489 2.138 0.233
40 N43 N N5 N N N 0 -11.287 1.267 -0.64
41 C44 C C32 N N N 0 -11.458 -0.065 -0.042
42 C45 C C33 N N N 0 -12.242 -0.956 -1.009
43 O46 O O4 N N N 0 -13.493 -0.335 -1.314
44 C47 C C34 N N N 0 -13.363 0.964 -1.899
45 C48 C C35 N N N 0 -12.591 1.875 -0.941
46 H1 H H1 N N N 0 6.135 0.417 -1.837
47 H2 H H2 N N N 0 4.319 0.001 0.604
48 H3 H H3 N N N 0 3.851 0.453 -1.068
49 H4 H H4 N N N 0 4.015 -1.74 -1.835
50 H5 H H5 N N N 0 7.666 -1.208 -0.927
51 H6 H H6 N N N 0 6.895 -1.151 0.688
52 H7 H H7 N N N 0 -2.013 0.359 -0.962
53 H8 H H8 N N N 0 8.277 -3.091 -1.485
54 H9 H H9 N N N 0 9.115 -4.649 0.333
55 H10 H H10 N N N 0 7.377 -5.125 0.727
56 H11 H H11 N N N 0 -0.281 -2.66 3.704
57 H12 H H12 N N N 0 -1.637 -3.699 3.203
58 H13 H H13 N N N 0 -0.033 -3.909 2.46
59 H14 H H14 N N N 0 10.205 5.511 -0.12
60 H15 H H15 N N N 0 10.053 4.977 1.577
61 H16 H H16 N N N 0 7.963 5.906 1.673
62 H17 H H17 N N N 0 6.319 4.45 0.857
63 H18 H H18 N N N 0 6.969 4.509 -0.813
64 H19 H H19 N N N 0 5.998 1.558 0.855
65 H20 H H20 N N N 0 3.543 -3.438 -0.052
66 H21 H H21 N N N 0 3.933 -2.216 1.182
67 H22 H H22 N N N 0 1.946 -1.2 -0.586
68 H23 H H23 N N N 0 0.272 -0.501 -0.819
69 H24 H H24 N N N 0 -3.128 -2.043 2.418
70 H25 H H25 N N N 0 7.077 -5.985 -1.641
71 H26 H H26 N N N 0 8.815 -5.509 -2.034
72 H27 H H27 N N N 0 8.014 2.9 1.584
73 H28 H H28 N N N 0 10.118 2.958 0.562
74 H30 H H30 N N N 0 -6.094 1.886 -1.222
75 H31 H H31 N N N 0 -8.395 2.743 -1.356
76 H32 H H32 N N N 0 -9.497 0.372 2.016
77 H33 H H33 N N N 0 -7.206 -0.509 2.162
78 H34 H H34 N N N 0 -10.932 2.158 1.229
79 H35 H H35 N N N 0 -10.472 3.147 -0.177
80 H37 H H37 N N N 0 -10.48 -0.507 0.149
81 H38 H H38 N N N 0 -12.007 0.025 0.896
82 H39 H H39 N N N 0 -11.668 -1.09 -1.926
83 H40 H H40 N N N 0 -12.421 -1.927 -0.546
84 H41 H H41 N N N 0 -12.823 0.886 -2.843
85 H42 H H42 N N N 0 -14.354 1.382 -2.081
86 H43 H H43 N N N 0 -13.158 1.996 -0.018
87 H44 H H44 N N N 0 -12.44 2.848 -1.407