Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5AV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N Y N 0 1.196 0.188 0.009
2 C3 C C2 N Y N 0 3.343 1.192 0.033
3 N4 N N1 N Y N 0 3.92 -0.017 0.09
4 C7 C C3 N Y N 0 3.862 2.479 0.003
5 C9 C C4 N N N 0 -1.004 -0.919 -0.001
6 C10 C C5 N Y N 0 -2.46 -0.534 -0.049
7 C11 C C6 N Y N 0 -4.813 0.098 0.3
8 C13 C C7 N Y N 0 -3.195 -0.373 -1.153
9 C15 C C8 N N N 0 -6.199 0.478 0.754
10 C C C9 N Y N 0 3.193 -1.114 0.108
11 N N N2 N Y N 0 1.978 1.312 -0.008
12 S S S1 N Y N 0 -3.497 -0.225 1.342
13 CL CL CL1 N N N 0 3.972 -2.664 0.183
14 C1 C C10 N Y N 0 1.799 -1.038 0.068
15 N5 N N3 N Y N 0 1.673 2.677 -0.063
16 C6 C C11 N Y N 0 2.793 3.362 -0.056
17 N8 N N4 N N N 0 -0.178 0.291 -0.026
18 N12 N N5 N Y N 0 -4.449 -0.034 -0.93
19 C14 C C12 N N N 0 -2.636 -0.563 -2.539
20 H1 H H1 N N N 0 4.909 2.745 0.023
21 H2 H H2 N N N 0 -0.805 -1.476 0.915
22 H3 H H3 N N N 0 -0.764 -1.541 -0.864
23 H4 H H4 N N N 0 -6.797 -0.423 0.891
24 H5 H H5 N N N 0 -6.137 1.02 1.698
25 H6 H H6 N N N 0 -6.666 1.113 0.001
26 H7 H H7 N N N 0 1.204 -1.939 0.083
27 H8 H H8 N N N 0 2.87 4.439 -0.09
28 H9 H H9 N N N 0 -0.598 1.164 -0.068
29 H10 H H10 N N N 0 -2.764 -1.602 -2.844
30 H11 H H11 N N N 0 -3.164 0.088 -3.237
31 H12 H H12 N N N 0 -1.575 -0.312 -2.541