Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 59A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 S N N 0 2.227 -1.098 -0.32
2 O1 O O1 N N N 0 2.2 -2.281 0.481
3 C3 C C3 S N N 0 1.452 -1.176 0.997
4 C4 C C4 N N N 0 -0.051 -1.25 0.926
5 O4 O O4 N N N 0 -0.625 -2.262 1.267
6 N1 N N1 N N N 0 -0.758 -0.192 0.482
7 C5 C C5 S N N 0 -2.219 -0.264 0.412
8 C6 C C6 N N N 0 -2.629 -0.901 -0.891
9 O5 O O5 N N N 0 -3.93 -1.071 -1.175
10 C10 C C10 S N N 0 -2.804 1.148 0.496
11 C12 C C12 N N N 0 -4.331 1.065 0.548
12 C11 C C11 N N N 0 -2.379 1.95 -0.736
13 C13 C C13 N N N 0 -4.911 2.465 0.758
14 OA O OA N N N 0 -1.787 -1.258 -1.68
15 C7 C C7 N N N 0 3.501 -0.292 -0.338
16 O2 O O2 N N N 0 4.563 -0.844 -0.505
17 O3 O O3 N N N 0 3.455 1.039 -0.17
18 C8 C C8 N N N 0 4.682 1.815 -0.188
19 C9 C C9 N N N 0 4.353 3.294 0.025
20 H2 H H2 N N N 0 1.654 -1.098 -1.247
21 H3 H H3 N N N 0 1.859 -0.646 1.859
22 HN1 H HN1 N N N 0 -0.298 0.618 0.208
23 H5 H H5 N N N 0 -2.593 -0.862 1.242
24 HO5 H HO5 N N N 0 -4.193 -1.48 -2.011
25 H10 H H10 N N N 0 -2.435 1.641 1.395
26 H121 H 1H12 N N N 0 -4.705 0.653 -0.389
27 H122 H 2H12 N N N 0 -4.631 0.42 1.374
28 H111 H 1H11 N N N 0 -2.795 2.955 -0.676
29 H112 H 2H11 N N N 0 -1.291 2.009 -0.773
30 H113 H 3H11 N N N 0 -2.747 1.457 -1.635
31 H131 H 1H13 N N N 0 -5.998 2.406 0.795
32 H132 H 2H13 N N N 0 -4.536 2.877 1.695
33 H133 H 3H13 N N N 0 -4.61 3.11 -0.068
34 H81 H 1H8 N N N 0 5.179 1.688 -1.15
35 H82 H 2H8 N N N 0 5.342 1.471 0.609
36 H91 H 1H9 N N N 0 5.274 3.877 0.012
37 H92 H 2H9 N N N 0 3.694 3.638 -0.772
38 H93 H 3H9 N N N 0 3.857 3.421 0.987