Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 4DJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C1 N N N 0 8.208 -0.611 -1.026
2 N05 N N1 N Y N 0 7.077 -0.002 -0.321
3 N06 N N2 N Y N 0 7.154 1.1 0.537
4 C07 C C2 N Y N 0 5.972 1.39 1.0
5 C09 C C3 N Y N 0 5.024 0.437 0.433
6 C10 C C4 N Y N 0 3.643 0.25 0.558
7 C12 C C5 N Y N 0 3.031 -0.777 -0.134
8 N13 N N3 N N N 0 1.649 -0.971 -0.015
9 C15 C C6 N Y N 0 0.811 0.116 0.171
10 N16 N N4 N Y N 0 1.319 1.339 0.129
11 C17 C C7 N Y N 0 0.549 2.403 0.302
12 C19 C C8 N Y N 0 -0.802 2.23 0.53
13 C21 C C9 N Y N 0 -1.309 0.929 0.569
14 N22 N N5 N Y N 0 -0.48 -0.093 0.381
15 N23 N N6 N N N 0 -2.66 0.707 0.789
16 C24 C C10 N N N 0 -3.582 1.841 0.885
17 C27 C C11 N N N 0 -4.125 2.176 -0.506
18 C30 C C12 N N N 0 -5.089 3.361 -0.406
19 O33 O O1 N N N 0 -5.596 3.674 -1.704
20 C35 C C13 N Y N 0 -3.141 -0.596 0.918
21 C36 C C14 N Y N 0 -3.203 -1.194 2.162
22 C38 C C15 N Y N 0 -3.686 -2.488 2.298
23 C40 C C16 N Y N 0 -4.111 -3.198 1.198
24 C42 C C17 N Y N 0 -4.06 -2.618 -0.068
25 N43 N N7 N Y N 0 -4.4 -3.054 -1.323
26 N45 N N8 N Y N 0 -4.124 -2.024 -2.23
27 C46 C C18 N Y N 0 -3.639 -0.997 -1.594
28 C48 C C19 N Y N 0 -3.572 -1.308 -0.216
29 C49 C C20 N Y N 0 3.783 -1.622 -0.951
30 C51 C C21 N Y N 0 5.131 -1.45 -1.081
31 C53 C C22 N Y N 0 5.772 -0.418 -0.399
32 H02 H H1 N N N 0 8.334 -0.128 -1.995
33 H04 H H2 N N N 0 9.115 -0.484 -0.436
34 H03 H H3 N N N 0 8.015 -1.674 -1.172
35 H08 H H4 N N N 0 5.735 2.193 1.682
36 H11 H H5 N N N 0 3.06 0.903 1.19
37 H14 H H6 N N N 0 1.279 -1.866 -0.063
38 H18 H H7 N N N 0 0.974 3.395 0.266
39 H20 H H8 N N N 0 -1.451 3.08 0.674
40 H26 H H9 N N N 0 -4.41 1.582 1.545
41 H25 H H10 N N N 0 -3.054 2.706 1.286
42 H28 H H11 N N N 0 -3.298 2.436 -1.166
43 H29 H H12 N N N 0 -4.654 1.312 -0.908
44 H32 H H13 N N N 0 -5.916 3.102 0.255
45 H31 H H14 N N N 0 -4.56 4.226 -0.004
46 H34 H H15 N N N 0 -6.214 4.417 -1.717
47 H37 H H16 N N N 0 -2.872 -0.65 3.035
48 H39 H H17 N N N 0 -3.728 -2.943 3.277
49 H41 H H18 N N N 0 -4.485 -4.204 1.317
50 H44 H H19 N N N 0 -4.767 -3.924 -1.544
51 H47 H H20 N N N 0 -3.339 -0.062 -2.045
52 H50 H H21 N N N 0 3.293 -2.422 -1.487
53 H52 H H22 N N N 0 5.7 -2.111 -1.717