Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 445

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C10 N Y N 0 -4.828 0.941 0.312
2 C11 C C11 N Y N 0 -6.134 1.164 0.701
3 C12 C C12 N Y N 0 -7.095 0.192 0.492
4 C13 C C13 N Y N 0 -6.752 -1.006 -0.107
5 C14 C C14 N Y N 0 -5.448 -1.236 -0.498
6 C9 C C9 N Y N 0 -4.48 -0.262 -0.291
7 N2 N N2 N N N 0 -3.16 -0.491 -0.686
8 C8 C C8 N N N 0 -2.142 0.031 0.028
9 O8 O O8 N N N 0 -2.368 0.618 1.066
10 C7 C C7 N N N 0 -0.738 -0.114 -0.458
11 O7 O O7 N N N 0 -0.512 -0.701 -1.496
12 N1 N N1 N N N 0 0.28 0.408 0.255
13 C1 C C1 R N N 0 1.658 0.266 -0.222
14 O5 O O5 N N N 0 2.26 -0.874 0.395
15 C5 C C5 R N N 0 3.605 -1.12 -0.022
16 C6 C C6 N N N 0 4.134 -2.373 0.677
17 O6 O O6 N N N 0 3.389 -3.512 0.243
18 C4 C C4 S N N 0 4.48 0.08 0.348
19 O4 O O4 N N N 0 5.813 -0.139 -0.12
20 C3 C C3 S N N 0 3.909 1.341 -0.308
21 O3 O O3 N N N 0 4.677 2.478 0.091
22 C2 C C2 R N N 0 2.455 1.522 0.14
23 O2 O O2 N N N 0 1.889 2.655 -0.521
24 H10 H H10 N N N 0 -4.078 1.702 0.471
25 H11 H H11 N N N 0 -6.405 2.099 1.169
26 H12 H H12 N N N 0 -8.116 0.37 0.797
27 H13 H H13 N N N 0 -7.505 -1.763 -0.268
28 H14 H H14 N N N 0 -5.181 -2.173 -0.965
29 HN2 H HN2 N N N 0 -2.975 -1.026 -1.474
30 HN1 H HN1 N N N 0 0.1 0.878 1.085
31 H1 H H1 N N N 0 1.656 0.136 -1.304
32 H5 H H5 N N N 0 3.629 -1.269 -1.102
33 H61 H H6 N N N 0 5.187 -2.511 0.428
34 H62 H H6A N N N 0 4.028 -2.26 1.756
35 H3 H H3 N N N 0 3.947 1.237 -1.392
36 HO6 H HO6 N N Y 0 3.671 -4.345 0.646
37 H4 H H4 N N N 0 4.49 0.204 1.431
38 HO4 H HO4 N N Y 0 6.424 0.583 0.08
39 HO3 H HO3 N N Y 0 4.37 3.313 -0.287
40 H2 H H2 N N N 0 2.423 1.675 1.219
41 HO2 H HO2 N N Y 0 0.966 2.826 -0.288