Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 2DG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 23


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -1.615 0.599 -0.265
2 C2 C C2 N N N 0 -0.872 0.612 -1.603
3 C3 C C3 R N N 0 0.153 -0.526 -1.616
4 C4 C C4 R N N 0 1.042 -0.397 -0.374
5 C5 C C5 R N N 0 0.154 -0.335 0.87
6 C6 C C6 N N N 0 1.034 -0.241 2.119
7 O1 O O1 N N Y 0 -2.26 -0.664 -0.094
8 O3 O O3 N N N 0 0.955 -0.436 -2.795
9 O4 O O4 N N N 0 1.824 0.795 -0.468
10 O5 O O5 N N N 0 -0.693 0.809 0.801
11 O6 O O6 N N N 0 0.206 -0.187 3.282
12 H1 H H1 N N N 0 -2.363 1.391 -0.259
13 H2 H H21 N N N 0 -1.583 0.471 -2.417
14 H22 H H22 N N N 0 -0.359 1.566 -1.726
15 H3 H H3 N N N 0 -0.364 -1.485 -1.598
16 H4 H H4 N N N 0 1.702 -1.262 -0.306
17 H5 H H5 N N N 0 -0.456 -1.236 0.925
18 H61 H H61 N N N 0 1.646 0.658 2.065
19 H62 H H62 N N N 0 1.681 -1.117 2.174
20 HO1 H HO1 N N Y 0 -2.72 -0.63 0.755
21 HO3 H HO3 N N Y 0 0.353 -0.51 -3.548
22 HO4 H HO4 N N Y 0 2.362 0.714 -1.267
23 HO6 H HO6 N N N 0 0.799 -0.128 4.044