Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1ND

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O O O N N N 0 4.808 1.304 1.672
2 C1 C C1 N N N 0 -4.419 -1.718 0.199
3 F1 F F1 N N N 0 -3.976 -2.946 0.701
4 N1 N N1 N Y N 0 -2.003 -1.053 0.363
5 C2 C C2 N Y N 0 -3.257 -0.762 0.113
6 F2 F F2 N N N 0 -4.966 -1.904 -1.075
7 N2 N N2 N Y N 0 -1.235 0.105 0.168
8 C3 C C3 N Y N 0 -2.074 1.096 -0.209
9 F3 F F3 N N N 0 -5.394 -1.189 1.053
10 N3 N N3 N N N 0 5.184 -0.19 0.072
11 C4 C C4 N N N 0 -1.734 2.527 -0.539
12 C5 C C5 N N N 0 -2.917 3.143 -1.297
13 C6 C C6 N N N 0 -4.214 2.868 -0.531
14 C7 C C7 N N N 0 -4.556 1.376 -0.623
15 C8 C C8 N Y N 0 -3.329 0.582 -0.248
16 C9 C C9 N Y N 0 0.149 0.214 0.333
17 C10 C C10 N Y N 0 0.687 1.332 0.961
18 C11 C C11 N Y N 0 2.049 1.443 1.126
19 C12 C C12 N Y N 0 2.892 0.43 0.662
20 C13 C C13 N Y N 0 2.349 -0.692 0.032
21 C14 C C14 N Y N 0 0.985 -0.799 -0.125
22 C15 C C15 N N N 0 4.354 0.545 0.837
23 C16 C C16 N N N 0 6.643 -0.281 0.233
24 C17 C C17 N N N 0 7.169 -1.213 -0.879
25 C18 C C18 N N N 0 6.048 -1.144 -1.95
26 C19 C C19 N N N 0 4.78 -1.041 -1.062
27 H4 H H4 N N N 0 -1.558 3.085 0.381
28 H4A H H4A N N N 0 -0.841 2.558 -1.164
29 H5 H H5 N N N 0 -2.77 4.219 -1.388
30 H5A H H5A N N N 0 -2.981 2.7 -2.291
31 H6 H H6 N N N 0 -4.084 3.147 0.515
32 H6A H H6A N N N 0 -5.023 3.454 -0.966
33 H7 H H7 N N N 0 -5.369 1.143 0.066
34 H7A H H7A N N N 0 -4.856 1.13 -1.641
35 H10 H H10 N N N 0 0.034 2.115 1.319
36 H11 H H11 N N N 0 2.466 2.312 1.614
37 H13 H H13 N N N 0 2.997 -1.477 -0.328
38 H14 H H14 N N N 0 0.564 -1.668 -0.608
39 H16 H H16 N N N 0 7.09 0.708 0.131
40 H16A H H16A N N N 0 6.882 -0.699 1.211
41 H17 H H17 N N N 0 8.11 -0.839 -1.282
42 H17A H H17A N N N 0 7.285 -2.231 -0.507
43 H18 H H18 N N N 0 6.162 -0.262 -2.579
44 H18A H H18A N N N 0 6.028 -2.052 -2.553
45 H19 H H19 N N N 0 4.48 -2.027 -0.708
46 H19A H H19A N N N 0 3.967 -0.572 -1.617