Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 16G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.526 1.021 -0.272
2 C2 C C2 R N N 0 2.48 -0.066 0.229
3 C3 C C3 R N N 0 1.974 -1.434 -0.239
4 C4 C C4 S N N 0 0.543 -1.638 0.267
5 C5 C C5 R N N 0 -0.336 -0.49 -0.236
6 C6 C C6 N N N 0 -1.754 -0.655 0.315
7 C7 C C7 N N N 0 4.661 1.017 0.318
8 C8 C C8 N N N 0 6.04 1.262 -0.238
9 N2 N N2 N N N 0 3.82 0.172 -0.311
10 O1 O O1 N N Y 0 1.519 1.027 -1.701
11 O3 O O3 N N N 0 2.818 -2.461 0.286
12 O4 O O4 N N N 0 0.035 -2.88 -0.225
13 O5 O O5 N N N 0 0.207 0.754 0.209
14 O6 O O6 N N N 0 -2.602 0.349 -0.246
15 O7 O O7 N N N 0 4.307 1.581 1.332
16 P P P N N N 0 -4.167 0.476 0.113
17 O1P O O1P N N N 0 -4.329 0.586 1.58
18 O2P O O2P N N N 0 -4.775 1.788 -0.594
19 O3P O O3P N N N 0 -4.946 -0.83 -0.416
20 H1 H H1 N N N 0 1.857 1.993 0.094
21 H2 H H2 N N N 0 2.516 -0.045 1.319
22 H3 H H3 N N N 0 1.985 -1.473 -1.328
23 H4 H H4 N N N 0 0.54 -1.648 1.357
24 H5 H H5 N N N 0 -0.366 -0.505 -1.325
25 H61 H H61 N N N 0 -2.134 -1.641 0.052
26 H62 H H62 N N N 0 -1.737 -0.55 1.4
27 H81 H H81 N N N 0 6.008 2.101 -0.933
28 H82 H H82 N N N 0 6.725 1.492 0.578
29 H83 H H83 N N N 0 6.384 0.37 -0.761
30 HN2 H HN2 N N N 0 4.104 -0.279 -1.122
31 HO1 H HO1 N N Y 0 0.935 1.693 -2.089
32 HO3 H HO3 N N Y 0 2.556 -3.355 0.029
33 HO4 H HO4 N N Y 0 -0.869 -3.074 0.058
34 HOP2 H HOP2 N N N 0 -5.716 1.928 -0.421
35 HOP3 H HOP3 N N N 0 -4.883 -0.965 -1.372