Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0X8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 64


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -3.629 2.063 -0.472
2 C2 C C2 N Y N 0 -3.199 3.382 -0.634
3 C3 C C3 N Y N 0 -1.863 3.71 -0.484
4 C8 C C4 N Y N 0 1.343 2.128 -0.019
5 C4 C C5 N Y N 0 -0.933 2.727 -0.17
6 C5 C C6 N Y N 0 -1.369 1.401 -0.018
7 C6 C C7 N Y N 0 -2.718 1.075 -0.158
8 O36 O O1 N N N 0 0.592 -6.297 0.101
9 C34 C C8 N N N 0 -0.1 -5.723 -0.718
10 O35 O O2 N N N 0 -1.137 -6.365 -1.293
11 C33 C C9 N N N 0 0.194 -4.33 -1.081
12 C32 C C10 N N N 0 1.218 -3.696 -0.513
13 C31 C C11 N N N 0 1.52 -2.267 -0.886
14 O30 O O3 N N N 0 1.777 -1.511 0.299
15 C14 C C12 N Y N 0 2.067 -0.196 0.139
16 C9 C C13 N Y N 0 1.046 0.762 0.137
17 C10 C C14 N N N 0 -0.365 0.362 0.293
18 O19 O O4 N N N 0 -0.683 -0.756 0.655
19 C25 C C15 N N N 0 -3.177 -0.35 0.019
20 C26 C C16 N N N 0 -3.531 -0.588 1.464
21 C27 C C17 N N N 0 -4.7 -1.089 1.778
22 C29 C C18 N N N 0 -5.123 -1.167 3.223
23 C28 C C19 N N N 0 -5.622 -1.587 0.695
24 O22 O O5 N N N 0 -4.946 1.753 -0.617
25 C23 C C20 N N N 0 -5.387 1.392 -1.927
26 C13 C C21 N Y N 0 3.385 0.221 -0.027
27 C18 C C22 N N N 0 4.501 -0.748 -0.037
28 C17 C C23 N N N 0 5.737 -0.28 0.137
29 C16 C C24 N N N 0 5.96 1.194 0.349
30 C20 C C25 N N N 0 7.35 1.572 -0.168
31 C21 C C26 N N N 0 5.876 1.506 1.844
32 O15 O O6 N N N 0 4.975 1.957 -0.348
33 C12 C C27 N Y N 0 3.679 1.586 -0.188
34 C11 C C28 N Y N 0 2.666 2.525 -0.183
35 O7 O O7 N N N 0 0.365 3.056 -0.009
36 O24 O O8 N N N 0 -4.1 4.35 -0.942
37 H1 H H1 N N N 0 -1.543 4.734 -0.612
38 H2 H H2 N N N 0 -1.291 -7.28 -1.022
39 H3 H H3 N N N 0 -0.42 -3.82 -1.808
40 H4 H H4 N N N 0 1.832 -4.206 0.214
41 H5 H H5 N N N 0 2.396 -2.238 -1.533
42 H6 H H6 N N N 0 0.665 -1.841 -1.411
43 H7 H H7 N N N 0 -4.052 -0.53 -0.604
44 H8 H H8 N N N 0 -2.376 -1.028 -0.275
45 H9 H H9 N N N 0 -2.821 -0.345 2.241
46 H10 H H10 N N N 0 -5.645 -0.251 3.499
47 H11 H H11 N N N 0 -5.787 -2.02 3.361
48 H12 H H12 N N N 0 -4.242 -1.287 3.853
49 H13 H H13 N N N 0 -5.11 -1.542 -0.266
50 H14 H H14 N N N 0 -5.907 -2.617 0.906
51 H15 H H15 N N N 0 -6.514 -0.962 0.662
52 H16 H H16 N N N 0 -4.84 0.512 -2.265
53 H17 H H17 N N N 0 -6.454 1.171 -1.904
54 H18 H H18 N N N 0 -5.203 2.219 -2.614
55 H19 H H19 N N N 0 4.321 -1.803 -0.181
56 H20 H H20 N N N 0 6.577 -0.958 0.126
57 H21 H H21 N N N 0 8.106 0.998 0.369
58 H22 H H22 N N N 0 7.414 1.35 -1.233
59 H23 H H23 N N N 0 7.52 2.636 -0.007
60 H24 H H24 N N N 0 4.884 1.247 2.214
61 H25 H H25 N N N 0 6.627 0.925 2.38
62 H26 H H26 N N N 0 6.057 2.569 2.004
63 H27 H H27 N N N 0 2.902 3.571 -0.307
64 H28 H H28 N N N 0 -4.494 4.78 -0.171