Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0VU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 4.514 2.87 -0.029
2 C2 C C2 N Y N 0 3.139 2.876 0.112
3 C3 C C3 N Y N 0 2.409 1.704 -0.09
4 C4 C C4 N Y N 0 3.068 0.528 -0.433
5 C5 C C5 N Y N 0 4.454 0.527 -0.574
6 C6 C C6 N Y N 0 5.174 1.707 -0.37
7 C7 C C7 N N N 0 5.162 -0.719 -0.938
8 N1 N N1 N N N 0 6.399 -0.956 -0.46
9 N2 N N2 N Y N 0 -1.75 1.706 0.336
10 N3 N N3 N Y N 0 0.239 0.582 -0.029
11 N4 N N4 N N N 0 -1.772 -0.608 0.004
12 C8 C C8 N N N 0 7.165 -2.126 -0.91
13 O1 O O1 N N N 0 4.627 -1.53 -1.669
14 C9 C C9 N N N 0 7.618 -2.921 0.318
15 C10 C C10 N N N 0 8.385 -1.995 1.265
16 C11 C C11 N N N 0 7.464 -0.866 1.734
17 C12 C C12 N N N 0 7.011 -0.045 0.516
18 C13 C C13 N Y N 0 0.934 1.713 0.063
19 C14 C C14 N Y N 0 0.253 2.909 0.305
20 C15 C C15 N Y N 0 -1.124 2.868 0.44
21 C16 C C16 N Y N 0 -1.078 0.587 0.106
22 C17 C C17 N Y N 0 -3.17 -0.608 0.026
23 C18 C C18 N Y N 0 -3.876 0.405 -0.61
24 C19 C C19 N Y N 0 -5.257 0.401 -0.587
25 C20 C C20 N Y N 0 -5.936 -0.61 0.068
26 C21 C C21 N Y N 0 -5.236 -1.62 0.702
27 C22 C C22 N Y N 0 -3.855 -1.625 0.678
28 S1 S S1 N N N 0 -7.698 -0.611 0.095
29 O2 O O2 N N N 0 -8.082 -1.372 1.232
30 O3 O O3 N N N 0 -8.103 0.735 -0.112
31 N5 N N5 N N N 0 -8.208 -1.462 -1.231
32 H1 H H1 N N N 0 5.073 3.781 0.123
33 H2 H H2 N N N 0 2.629 3.789 0.379
34 H3 H H3 N N N 0 2.507 -0.382 -0.59
35 H4 H H4 N N N 0 6.248 1.709 -0.483
36 H5 H H5 N N N 0 -1.288 -1.444 -0.082
37 H6 H H6 N N N 0 6.535 -2.754 -1.54
38 H7 H H7 N N N 0 8.036 -1.797 -1.477
39 H8 H H8 N N N 0 6.746 -3.326 0.832
40 H9 H H9 N N N 0 8.267 -3.738 0.003
41 H10 H H10 N N N 0 8.729 -2.564 2.129
42 H11 H H11 N N N 0 9.243 -1.572 0.743
43 H12 H H12 N N N 0 6.593 -1.29 2.234
44 H13 H H13 N N N 0 8.003 -0.221 2.427
45 H14 H H14 N N N 0 7.872 0.45 0.065
46 H15 H H15 N N N 0 6.28 0.701 0.829
47 H16 H H16 N N N 0 0.789 3.843 0.385
48 H17 H H17 N N N 0 -1.681 3.773 0.627
49 H18 H H18 N N N 0 -3.346 1.194 -1.121
50 H19 H H19 N N N 0 -5.807 1.188 -1.082
51 H20 H H20 N N N 0 -5.77 -2.408 1.213
52 H21 H H21 N N N 0 -3.309 -2.417 1.17
53 H23 H H23 N N N 0 -9.157 -1.578 -1.397
54 H22 H H22 N N N 0 -7.558 -1.845 -1.841