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Session Map (id=935-9E-345)

Interfaces in PDB 1j9h crystal.
Space symmetry group: P 41 2 2. Resolution: 1.40 Å

CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES

Interfaces

##			Structure 1				×	Structure 2						interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
Id	NN	«»	Range	ⁱN_at	ⁱN_res	Surface Å²	×	Range	Symmetry op-n	Sym.ID	ⁱN_at	ⁱN_res	Surface Å²	interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
1	`1`		D	`53`	`8`	`2132`	`◊`	C	x,y,z	`1_555`	`51`	`8`	`2141`	`465.4`	`-6.0`	`0.771`	`16`	`0`	`0`	`0.556`
	`2`		B	`49`	`8`	`2134`	`◊`	A	x,y,z	`1_555`	`51`	`8`	`2136`	`464.9`	`-5.8`	`0.766`	`16`	`0`	`0`	`0.556`
	*Average:*													`465.2`	`-5.9`	`0.768`	`16`	`0`	`0`	`0.556`
2	`3`		[CBR]A:7	`20`	`1`	`440`	`cf`	A	x,y,z	`1_555`	`33`	`2`	`2136`	`248.6`	`3.7`	`0.743`	`0`	`0`	`0`	`0.000`
	`4`		[CBR]D:34	`20`	`1`	`436`	`cf`	D	x,y,z	`1_555`	`32`	`2`	`2132`	`247.4`	`3.5`	`0.734`	`0`	`0`	`0`	`0.000`
	`5`		[CBR]B:16	`20`	`1`	`439`	`cf`	B	x,y,z	`1_555`	`32`	`2`	`2134`	`246.4`	`3.8`	`0.752`	`0`	`0`	`0`	`0.000`
	`6`		[CBR]C:25	`20`	`1`	`436`	`cf`	C	x,y,z	`1_555`	`32`	`2`	`2141`	`244.7`	`3.8`	`0.750`	`0`	`0`	`0`	`0.000`
	*Average:*													`246.8`	`3.7`	`0.745`	`0`	`0`	`0`	`0.000`
3	`7`		A	`17`	`2`	`2136`	`◊`	A	y,x,-z+3/4	`7_555`	`17`	`2`	`2136`	`128.3`	`-0.6`	`0.730`	`0`	`0`	`0`	`0.000`
	`8`		D	`17`	`2`	`2132`	`◊`	B	x,-y+1,-z+1/2	`6_565`	`16`	`2`	`2134`	`127.0`	`-0.4`	`0.739`	`0`	`0`	`0`	`0.000`
	`9`		C	`17`	`2`	`2141`	`◊`	C	-y+1,-x+1,-z+5/4	`8_666`	`17`	`2`	`2141`	`125.0`	`-0.3`	`0.749`	`2`	`0`	`0`	`0.000`
	*Average:*													`126.8`	`-0.4`	`0.739`	`1`	`0`	`0`	`0.000`
4	`10`		D	`16`	`1`	`2132`	`◊`	D	-y+1,-x+1,-z+5/4	`8_666`	`16`	`1`	`2132`	`103.8`	`2.1`	`0.856`	`0`	`0`	`0`	`0.000`
	`11`		C	`16`	`1`	`2141`	`◊`	A	x,-y+1,-z+1/2	`6_565`	`16`	`1`	`2136`	`102.1`	`2.0`	`0.851`	`0`	`0`	`0`	`0.000`
	`12`		B	`16`	`1`	`2134`	`◊`	B	y,x,-z+3/4	`7_555`	`16`	`1`	`2134`	`102.0`	`1.9`	`0.850`	`0`	`0`	`0`	`0.000`
	*Average:*													`102.6`	`2.0`	`0.852`	`0`	`0`	`0`	`0.000`
5	`13`		C	`15`	`1`	`2141`	`◊`	C	-x+2,y,-z+1	`5_756`	`15`	`1`	`2141`	`97.6`	`3.1`	`0.893`	`0`	`0`	`0`	`0.000`
	`14`		B	`15`	`1`	`2134`	`◊`	B	x,-y+2,-z+1/2	`6_575`	`15`	`1`	`2134`	`96.8`	`2.5`	`0.870`	`0`	`0`	`0`	`0.000`
	`15`		A	`15`	`1`	`2136`	`◊`	A	x,-y+1,-z+1/2	`6_565`	`15`	`1`	`2136`	`95.7`	`2.8`	`0.883`	`0`	`0`	`0`	`0.000`
	`16`		D	`15`	`1`	`2132`	`◊`	D	-x+1,y,-z+1	`5_656`	`15`	`1`	`2132`	`94.8`	`3.0`	`0.890`	`0`	`0`	`0`	`0.000`
	*Average:*													`96.2`	`2.8`	`0.884`	`0`	`0`	`0`	`0.000`
6	`17`		B	`11`	`2`	`2134`	`◊`	A	x,-y+2,-z+1/2	`6_575`	`11`	`2`	`2136`	`89.8`	`-1.2`	`0.605`	`0`	`0`	`0`	`0.000`
	`18`		D	`11`	`2`	`2132`	`◊`	C	-x+1,y,-z+1	`5_656`	`9`	`2`	`2141`	`89.4`	`-1.4`	`0.565`	`0`	`0`	`0`	`0.000`
	`19`		D	`10`	`2`	`2132`	`◊`	C	-x+2,y,-z+1	`5_756`	`11`	`2`	`2141`	`89.2`	`-1.3`	`0.584`	`0`	`0`	`0`	`0.000`
	`20`		B	`10`	`2`	`2134`	`◊`	A	x,-y+1,-z+1/2	`6_565`	`11`	`2`	`2136`	`88.5`	`-1.2`	`0.590`	`0`	`0`	`0`	`0.000`
	*Average:*													`89.2`	`-1.3`	`0.586`	`0`	`0`	`0`	`0.000`
7	`21`		[CBR]D:34	`8`	`1`	`436`	`◊`	B	y,x,-z+3/4	`7_555`	`8`	`2`	`2134`	`72.2`	`-0.2`	`0.491`	`0`	`0`	`0`	`0.000`
	`22`		[CBR]C:25	`8`	`1`	`436`	`◊`	A	y,x,-z+3/4	`7_555`	`8`	`2`	`2136`	`70.0`	`-0.2`	`0.509`	`0`	`0`	`0`	`0.000`
	*Average:*													`71.1`	`-0.2`	`0.500`	`0`	`0`	`0`	`0.000`
8	`23`		[CBR]D:34	`5`	`1`	`436`	`◊`	C	x,y,z	`1_555`	`9`	`3`	`2141`	`68.9`	`-0.1`	`0.538`	`3`	`0`	`0`	`0.134`
	`24`		[CBR]B:16	`5`	`1`	`439`	`◊`	A	x,y,z	`1_555`	`9`	`3`	`2136`	`68.5`	`-0.4`	`0.525`	`3`	`0`	`0`	`0.134`
	`25`		[CBR]C:25	`5`	`1`	`436`	`◊`	D	x,y,z	`1_555`	`9`	`3`	`2132`	`68.2`	`-0.2`	`0.534`	`3`	`0`	`0`	`0.134`
	`26`		[CBR]A:7	`5`	`1`	`440`	`◊`	B	x,y,z	`1_555`	`9`	`3`	`2134`	`68.0`	`-0.3`	`0.526`	`3`	`0`	`0`	`0.134`
	*Average:*													`68.4`	`-0.3`	`0.531`	`3`	`0`	`0`	`0.134`
9	`27`		C	`8`	`2`	`2141`	`◊`	A	y,x,-z+3/4	`7_555`	`7`	`2`	`2136`	`63.1`	`-2.9`	`0.404`	`0`	`0`	`0`	`0.000`
	`28`		D	`8`	`2`	`2132`	`◊`	B	y,x,-z+3/4	`7_555`	`7`	`2`	`2134`	`58.3`	`-2.6`	`0.423`	`0`	`0`	`0`	`0.000`
	*Average:*													`60.7`	`-2.7`	`0.413`	`0`	`0`	`0`	`0.000`
10	`29`		C	`5`	`1`	`2141`	`◊`	B	x,-y+1,-z+1/2	`6_565`	`5`	`1`	`2134`	`38.5`	`0.9`	`0.712`	`0`	`0`	`0`	`0.000`
	`30`		B	`5`	`1`	`2134`	`◊`	A	y,x,-z+3/4	`7_555`	`5`	`1`	`2136`	`32.5`	`0.7`	`0.700`	`0`	`0`	`0`	`0.000`
	`31`		D	`5`	`1`	`2132`	`◊`	C	-y+1,-x+1,-z+5/4	`8_666`	`5`	`1`	`2141`	`31.8`	`0.8`	`0.703`	`0`	`0`	`0`	`0.000`
	`32`		D	`3`	`1`	`2132`	`◊`	A	x,-y+1,-z+1/2	`6_565`	`5`	`1`	`2136`	`26.6`	`0.7`	`0.680`	`0`	`0`	`0`	`0.000`
	*Average:*													`32.4`	`0.8`	`0.699`	`0`	`0`	`0`	`0.000`
11	`33`		[CA]B:104	`1`	`1`	`85`	`f`	B	x,y,z	`1_555`	`4`	`2`	`2134`	`35.4`	`-8.2`	`0.000`	`0`	`0`	`0`	`0.649`
	`34`		[CA]A:103	`1`	`1`	`85`	`f`	A	x,y,z	`1_555`	`4`	`2`	`2136`	`35.0`	`-8.0`	`0.000`	`0`	`0`	`0`	`0.649`
	`35`		[CA]C:101	`1`	`1`	`85`	`f`	C	x,y,z	`1_555`	`5`	`2`	`2141`	`33.0`	`-7.3`	`0.000`	`0`	`0`	`0`	`0.649`
	`36`		[CA]D:102	`1`	`1`	`85`	`f`	D	x,y,z	`1_555`	`4`	`2`	`2132`	`32.9`	`-7.4`	`0.000`	`0`	`0`	`0`	`0.649`
	*Average:*													`34.1`	`-7.7`	`0.000`	`0`	`0`	`0`	`0.649`
12	`37`		[CA]B:104	`1`	`1`	`85`	`◊`	A	x,-y+2,-z+1/2	`6_575`	`3`	`1`	`2136`	`29.6`	`-6.3`	`0.000`	`0`	`0`	`0`	`0.000`
	`38`		[CA]D:102	`1`	`1`	`85`	`◊`	C	-x+1,y,-z+1	`5_656`	`3`	`1`	`2141`	`29.6`	`-6.2`	`0.000`	`0`	`0`	`0`	`0.000`
	`39`		[CA]C:101	`1`	`1`	`85`	`◊`	D	-x+2,y,-z+1	`5_756`	`3`	`1`	`2132`	`29.3`	`-6.1`	`0.000`	`0`	`0`	`0`	`0.000`
	`40`		[CA]A:103	`1`	`1`	`85`	`◊`	B	x,-y+1,-z+1/2	`6_565`	`3`	`1`	`2134`	`28.9`	`-6.2`	`0.000`	`0`	`0`	`0`	`0.000`
	*Average:*													`29.4`	`-6.2`	`0.000`	`0`	`0`	`0`	`0.000`
13	`41`		B	`2`	`2`	`2134`	`◊`	[CA]C:101	-x+2,-y+1,z-1/2	`2_764`	`1`	`1`	`85`	`9.8`	`-2.0`	`0.000`	`0`	`0`	`0`	`0.000`
	`42`		C	`2`	`2`	`2141`	`◊`	[CA]D:102	-y+1,x,z+1/4	`3_655`	`1`	`1`	`85`	`9.1`	`-1.8`	`0.000`	`0`	`0`	`0`	`0.000`
	`43`		[CA]A:103	`1`	`1`	`85`	`◊`	D	x,y,z	`1_555`	`2`	`2`	`2132`	`4.6`	`-0.9`	`0.000`	`0`	`0`	`0`	`0.000`
	`44`		A	`2`	`2`	`2136`	`◊`	[CA]B:104	-y+2,x,z+1/4	`3_755`	`1`	`1`	`85`	`3.1`	`-0.6`	`0.000`	`0`	`0`	`0`	`0.000`
	*Average:*													`6.6`	`-1.3`	`0.000`	`0`	`0`	`0`	`0.000`
14	`45`		C	`4`	`1`	`2141`	`◊`	[CBR]A:7	y,x-1,-z+3/4	`7_545`	`2`	`1`	`440`	`8.9`	`-0.1`	`0.409`	`0`	`0`	`0`	`0.000`
	`46`		D	`2`	`1`	`2132`	`◊`	[CBR]B:16	y,x-1,-z+3/4	`7_545`	`2`	`1`	`439`	`2.3`	`0.1`	`0.425`	`0`	`0`	`0`	`0.000`
	*Average:*													`5.6`	`0.0`	`0.417`	`0`	`0`	`0`	`0.000`
15	`47`		[CBR]C:25	`1`	`1`	`436`	`◊`	C	-y+1,x,z+1/4	`3_655`	`2`	`1`	`2141`	`7.7`	`-0.4`	`0.261`	`0`	`0`	`0`	`0.000`
	`48`		[CBR]D:34	`1`	`1`	`436`	`◊`	B	x,y,z	`1_555`	`2`	`1`	`2134`	`6.0`	`-0.3`	`0.273`	`0`	`0`	`0`	`0.000`
	*Average:*													`6.9`	`-0.4`	`0.267`	`0`	`0`	`0`	`0.000`
16	`49`		D	`3`	`1`	`2132`	`◊`	A	x,y,z	`1_555`	`2`	`1`	`2136`	`7.3`	`-0.4`	`0.444`	`0`	`0`	`0`	`0.000`
	`50`		A	`2`	`1`	`2136`	`◊`	B	-y+2,x,z+1/4	`3_755`	`2`	`1`	`2134`	`6.0`	`-0.3`	`0.430`	`0`	`0`	`0`	`0.000`
	`51`		C	`2`	`1`	`2141`	`◊`	D	-y+1,x,z+1/4	`3_655`	`2`	`1`	`2132`	`4.9`	`-0.5`	`0.389`	`0`	`0`	`0`	`0.000`
	`52`		B	`1`	`1`	`2134`	`◊`	C	-x+2,-y+1,z-1/2	`2_764`	`1`	`1`	`2141`	`3.2`	`-0.3`	`0.252`	`0`	`0`	`0`	`0.000`
	*Average:*													`5.4`	`-0.4`	`0.379`	`0`	`0`	`0`	`0.000`
17	`53`		C	`1`	`1`	`2141`	`◊`	A	y,x-1,-z+3/4	`7_545`	`1`	`1`	`2136`	`2.9`	`-0.3`	`0.252`	`0`	`0`	`0`	`0.000`
	`54`		D	`1`	`1`	`2132`	`◊`	B	y,x-1,-z+3/4	`7_545`	`1`	`1`	`2134`	`1.6`	`-0.2`	`0.280`	`0`	`0`	`0`	`0.000`
	*Average:*													`2.3`	`-0.2`	`0.266`	`0`	`0`	`0`	`0.000`

PDBe PISA v1.52 [20/10/2014]

Protein Data Bank
in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank
in Europe