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},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002121?format=api"
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{
"type": "studies",
"id": "MGYS00004077",
"attributes": {
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"bioproject": "PRJEB2994",
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"is-private": false,
"last-update": "2024-06-28T10:58:15",
"secondary-accession": "ERP001390",
"centre-name": "PRIC",
"public-release-date": null,
"study-abstract": "Planktonic bacteria play key role in biogeochemical cycles and energy\n flow in marine ecosystems. However, our knowledge of the extent and character of\n bacterial diversity in polar marine environments is still limited. Here we present\n the use of high throughput DNA pyrosequencing and statistical inference to assess\n the diversity of planktonic bacteria in the arctic Canada Basin, and Kongsfjorden in\n Spitsbergen. The V3 region of the 16S rRNA gene was amplified from seawater samples\n collected from the upper water column. The number of bacterial 16S rRNA sequences\n obtained from each sites varied from 7433 to 9218. In the Canada Basin, the most\n abundant bacterial groups in two sites of water at 10m depth were the Proteobacteria\n (mainly Alphaproteobacteria), Actinobacteria, Bacteroidetes and Cyanobacteria.\n Different bacterial communities were observed in the deeper water (80 or 100m depth)\n at the two sites. The Proteobacteria and Bacteroidetes also formed the dominant\n bacterial groups in surface water of Kongsfjorden. However, Gammaproteobacteria\n accounted for more than 90% of the Proteobacteria.",
"study-name": "Planktonic bacterial communities in the arctic Canada Basin and\n Kongsfjorden",
"data-origination": "SUBMITTED"
},
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}
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},
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}
},
{
"type": "studies",
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"is-private": false,
"last-update": "2024-06-28T10:51:51",
"secondary-accession": "SRP083079",
"centre-name": "Marine Biological Laboratory",
"public-release-date": null,
"study-abstract": "Site U1387 offers a chance to study the response of microbial assemblage to specific seafloor events such as contourite depositions, changes in bottom current energy, shifts in organic matter deposition rates, and geochemical changes that are representative of seafloor processes during rapid climate change.",
"study-name": "marine sediment metagenome Targeted Locus (Loci)",
"data-origination": "HARVESTED"
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}
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{
"type": "studies",
"id": "MGYS00004148",
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"is-private": false,
"last-update": "2024-06-28T10:46:54",
"secondary-accession": "DRP003784",
"centre-name": "Japan Agency for Marine-Earth Science and Technology",
"public-release-date": null,
"study-abstract": "Difference of microbial diversity by the 16S rRNA gene in chimney structures between two hydrothermal fields on central Indian Ridge.",
"study-name": "Microbial community structures of chimney in DODO and Solitaire hydrothermal fields",
"data-origination": "HARVESTED"
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{
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"is-private": false,
"last-update": "2024-06-27T16:55:18",
"secondary-accession": "ERP148484",
"centre-name": "Leitat Technological Center",
"public-release-date": null,
"study-abstract": "In this study, strains were isolated from different points of the food industry and characterized by classical microbiological methods. DNA was then extracted and sequenced by shotgun technology to assess metabolic potential.",
"study-name": "WGS of bacterial strains from food industry",
"data-origination": "SUBMITTED"
},
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}
}
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},
{
"type": "studies",
"id": "MGYS00006662",
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"is-private": false,
"last-update": "2024-06-03T09:12:42",
"secondary-accession": "ERP155836",
"centre-name": "Popescu Lab",
"public-release-date": null,
"study-abstract": "All the soybean stuff",
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{
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"last-update": "2024-06-01T18:56:19",
"secondary-accession": "ERP134350",
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"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB31095, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Host-associated:Fish:Digestive system:Intestine.",
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"secondary-accession": "ERP141229",
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"secondary-accession": "ERP141352",
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"secondary-accession": "ERP139852",
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"study-abstract": "The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB19833, and was assembled with metaSPAdes v3.15.3, megahit v1.2.9. This project includes samples from the following biomes: root:Host-associated:Fish:Digestive system.",
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