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"study-abstract": "In-situ benthic chamber experiments at the polymetallic nodule covered abyssal seafloor revealed O2 rising to more than three times the background concentration over the course of two days in 95% of experiments. Dark oxygen production (DOP) was detected at multiple sites across the Pacific and was observed in ex-situ 28 incubations, including in the presence of only nodules.",
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"study-abstract": "Stratified lakes and ponds that feature steep oxygen gradients are known to be significant net sources of greenhouse gases and hotspots in the carbon cycle. Despite their significant biogeochemical roles, the resident microbial communities, especially in the oxygen depleted hypolimnetic compartments are poorly known. In this paper, we present a comprehensive metagenome dataset including shotgun metagenomes from around 30 stratified lakes and ponds mainly located in the boreal and subarctic regions, but also including one reservoir from tropical Puerto Rico and one Swiss lake from the temperate zone. For most lakes and ponds, the data includes a vertical sample set spanning the oxic surface waters to anoxic bottom layers. In addition to the metagenomic sequences, the dataset includes environmental variables for the samples, such as oxygen, nutrient and carbon concentrations. The dataset is ideal for further exploring the microbial taxonomic and functional diversity in freshwater environments and climate change impacts on the functioning of these ecosystems.",
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"study-abstract": "Mammals have diversified into many dietary niches. Specialized myrmecophagous (ant- and termite-eating) placental mammals represent a textbook example of evolutionary convergence driven by extreme diet specialization. Armadillos, anteaters, aardvarks, pangolins, and aardwolves thus provide a model system for understanding the potential role of gut microbiota in the convergent adaptation to myrmecophagy. Here, we expand upon previous mammalian gut microbiome studies by using high-throughput barcoded Illumina sequencing of the 16S rRNA gene to characterize the composition of gut microbiota in 15 species representing all placental myrmecophagous lineages and their close relatives from zoo- and field-collected samples. We confirm that both diet and phylogeny drive the evolution of mammalian gut microbiota, with cases of convergence in global composition, but also examples of phylogenetic inertia. Our results reveal specialized placental myrmecophages as a spectacular case of large-scale convergence in gut microbiome composition. Indeed, Neighbor-Net networks and beta diversity plots based on UniFrac distances show significant clustering of myrmecophagous species (anteaters, aardvarks, and aardwolves) even though they belong to phylogenetically distant lineages representing different orders. The aardwolf, which diverged from carnivorous hyenas only in the last 10 million years, experienced a convergent shift in the composition of its gut microbiome to become more similar to other myrmecophages. These results confirm diet adaptation to be a major driving factor of convergence in gut microbiome composition over evolutionary timescales. This study sets the scene for future metagenomic studies aiming at evaluating potential convergence in functional gene content in the microbiomes of specialized mammalian myrmecophages.",
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"study-abstract": "Fibrobacter is a genus of cellulose-degrading bacteria that includes species demonstrated to be important for fiber digestion in the rumen of animals such as cattle. However, less is known regarding populations in the guts of non-ruminant herbivores. Samples of gastrointestinal contents and feces from diverse herbivores were collected and analyzed using both culture and culture-independent approaches to determine Fibrobacter presence, abundance, and phylogenetic diversity in these systems. These data were generated using Illumina sequencing of V4 16S rRNA amplicons in order to assess whether sequences generated from isolates were representative of the abundant populations in vivo, as well as to determine relationships with other bacterial taxa.",
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"study-abstract": "The composition of the bacterial community associated with a controlled environmental tower was determined. This included from the irrigation system, the plant growth substrate and rhizosphere of two edible plant species. Composition was determine from the 16S amplicon short-read sequences.",
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"study-abstract": "Bacterial diversity and community composition should be assessed for grassland and forest soils in the three German Biodiversity Exploratories (Schorfheide-Chorin, Hainich-Dün, Schwäbische Alb). Grassland soil samples were derived from meadows, pastures or mown pastures that were either fertilized or non-fertilized. Forest soil samples were derived from age class forest, selection forest or natural forest and dominated by either beech, oak, pine or spruce trees.The study focused on the effect of land use, management, fertilization and tree species as well as edaphic parameters onto the bacterial community and diversity to identify drivers of diversity and community composition.",
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