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InterPro-Version: 108.0
InterPro-Version-Minor: 0
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{
"metadata": {
"accession": "A4Y952",
"id": "RLMD_SHEPC",
"source_organism": {
"taxId": "319224",
"scientificName": "Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)",
"fullName": "Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)"
},
"name": "23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD",
"description": [
"Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA"
],
"length": 450,
"sequence": "MAQFFKAKPNSSKQLSAKLSLNVDQLDHLGAGIAQYQGKVVFIPGALPDETVTVQLTEQKKNYARAKLIKVDAQSPERVEPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVPFAKLLNQLSAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAEQHQIYICLQDNEGQFQGVGVELVLPVYQLLDENAQSDAVSLSFTPGNFVQVNSQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVSQARVNAKANNLDKLTFYHGDLSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSTVLLERGYRLQRLGLIDMFPQTHHIEAMALFELTK",
"proteome": null,
"gene": "rlmD",
"go_terms": [
{
"identifier": "GO:0008173",
"name": "RNA methyltransferase activity",
"category": {
"code": "F",
"name": "molecular_function"
}
},
{
"identifier": "GO:0006396",
"name": "RNA processing",
"category": {
"code": "P",
"name": "biological_process"
}
},
{
"identifier": "GO:0003723",
"name": "RNA binding",
"category": {
"code": "F",
"name": "molecular_function"
}
}
],
"protein_evidence": 3,
"source_database": "reviewed",
"is_fragment": false,
"in_alphafold": true,
"in_bfvd": false,
"ida_accession": "4613b20288d0b22a0aa2c4b01699738f5be6fb90",
"counters": {
"domain_architectures": 20031,
"entries": 23,
"isoforms": 0,
"proteomes": 0,
"sets": 3,
"structures": 0,
"taxa": 1,
"dbEntries": {
"cathgene3d": 3,
"ssf": 2,
"profile": 2,
"pfam": 2,
"cdd": 1,
"ncbifam": 2,
"panther": 1,
"hamap": 1,
"prosite": 2,
"interpro": 7
},
"proteome": 0,
"taxonomy": 1,
"similar_proteins": 20031
}
}
}