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{
"metadata": {
"accession": "cd10017",
"entry_id": null,
"type": "domain",
"go_terms": null,
"source_database": "cdd",
"member_databases": null,
"integrated": "IPR003340",
"hierarchy": null,
"name": {
"name": "Plant-specific B3-DNA binding domain",
"short": "B3_DNA"
},
"description": [
{
"text": "<p>The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. [[cite:PUB00126678], [cite:PUB00126679], [cite:PUB00126680], [cite:PUB00126681], [cite:PUB00126682]]</p>",
"llm": false,
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"literature": {
"PUB00126679": {
"PMID": 18986826,
"ISBN": null,
"volume": "13",
"issue": "12",
"year": 2008,
"title": "The plant B3 superfamily.",
"URL": null,
"raw_pages": "647-55",
"medline_journal": "Trends Plant Sci",
"ISO_journal": "Trends Plant Sci",
"authors": [
"Swaminathan K",
"Peterson K",
"Jack T."
],
"DOI_URL": null
},
"PUB00126680": {
"PMID": 18272381,
"ISBN": null,
"volume": "46",
"issue": "3",
"year": 2008,
"title": "Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains.",
"URL": null,
"raw_pages": "394-401",
"medline_journal": "Plant Physiol Biochem",
"ISO_journal": "Plant Physiol Biochem",
"authors": [
"Yamasaki K",
"Kigawa T",
"Inoue M",
"Watanabe S",
"Tateno M",
"Seki M",
"Shinozaki K",
"Yokoyama S."
],
"DOI_URL": null
},
"PUB00126678": {
"PMID": 19503786,
"ISBN": null,
"volume": "4",
"issue": "6",
"year": 2009,
"title": "Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification.",
"URL": null,
"raw_pages": "e5791",
"medline_journal": "PLoS One",
"ISO_journal": "PLoS One",
"authors": [
"Romanel EA",
"Schrago CG",
"Counago RM",
"Russo CA",
"Alves-Ferreira M."
],
"DOI_URL": null
},
"PUB00126682": {
"PMID": 21155018,
"ISBN": null,
"volume": "8 Suppl 1",
"issue": null,
"year": 2010,
"title": "Stepwise origin and functional diversification of the AFL subfamily B3 genes during land plant evolution.",
"URL": null,
"raw_pages": "33-45",
"medline_journal": "J Bioinform Comput Biol",
"ISO_journal": "J Bioinform Comput Biol",
"authors": [
"Li Y",
"Jin K",
"Zhu Z",
"Yang J."
],
"DOI_URL": null
},
"PUB00126681": {
"PMID": 18691932,
"ISBN": null,
"volume": "11",
"issue": "5",
"year": 2008,
"title": "Functional symmetry of the B3 network controlling seed development.",
"URL": null,
"raw_pages": "548-53",
"medline_journal": "Curr Opin Plant Biol",
"ISO_journal": "Curr Opin Plant Biol",
"authors": [
"Suzuki M",
"McCarty DR."
],
"DOI_URL": null
}
},
"set_info": {
"accession": "cl15242",
"name": "BfiI_C_EcoRII_N_B3"
},
"overlaps_with": null,
"counters": {
"subfamilies": 0,
"domain_architectures": 0,
"interactions": 0,
"matches": 70495,
"pathways": 0,
"proteins": 53382,
"proteomes": 408,
"sets": 1,
"structural_models": {
"alphafold": 45957,
"bfvd": 0
},
"structures": 20,
"taxa": 1442
},
"entry_annotations": {},
"cross_references": {},
"is_llm": false,
"is_reviewed_llm": false,
"is_updated_llm": false,
"representative_structure": {
"accession": "6j9b",
"name": "Arabidopsis FUS3-DNA complex"
}
}
}
