A flexible pipeline for Single Cell RNA-seq analysis that integrates many existing tools for
filtering and mapping reads, quantifying expression, clustering, finding marker genes and variable
genes. The workflows maximize reproducibility by making use of Bioconda, Biocontainers, NextFlow
and Galaxy. They can be run on the cloud, local machines or local premises.
Single Cell Expression Atlas t-SNE plot widget
There are detailed instructions to integrate the plots in your service in the linked GitHub
Expression Atlas update: from tissues to single cells Nucleic Acids Research, 30 October 2019.