Browse plant experiments

Thanks to funding from the Gramene project, Expression Atlas contains 734 plant experiments, studying e.g. Arabidopsis, rice, and maize.

The baseline experiments, are either RNA-seq or proteomics, and display expression levels of gene products under 'normal' conditions (e.g. normal rice tissues). Each experiment is manually curated to a high standard, and RNA expression levels are calculated using the iRAP pipeline.

The differential experiments in Atlas, containing both microarray and RNA-seq data, allows users to query which genes are up-/down-regulatedin different experimental conditions, e.g. 'in Arabidopsis shoots, what genes are upregulated in plants treated by X?'

Baseline experiments

Brachypodium distachyon

Brassica oleracea

Brassica rapa subsp. rapa

Differential experiments

Arabidopsis thaliana

Glycine max

Hordeum vulgare

Medicago truncatula

Oryza sativa

Oryza sativa Indica Group

Oryza sativa Japonica Group

Physcomitrella patens

Populus trichocarpa

Solanum lycopersicum

Solanum tuberosum

Sorghum bicolor

Theobroma cacao

Triticum aestivum

Vitis vinifera

Zea mays