Browse plant experiments

Thanks to funding from the Gramene project, Expression Atlas contains 794 plant experiments, studying e.g. Arabidopsis, rice, and maize.

The baseline experiments, are either RNA-seq or proteomics, and display expression levels of gene products under 'normal' conditions (e.g. normal rice tissues). Each experiment is manually curated to a high standard, and RNA expression levels are calculated using the iRAP pipeline.

The differential experiments in Atlas, containing both microarray and RNA-seq data, allows users to query which genes are up-/down-regulatedin different experimental conditions, e.g. 'in Arabidopsis shoots, what genes are upregulated in plants treated by X?'

Baseline experiments

Beta vulgaris subsp. vulgaris

Brachypodium distachyon

Brassica oleracea

Brassica rapa subsp. rapa

Chlamydomonas reinhardtii

Populus trichocarpa

Differential experiments

arabidopsis lyrata

arabidopsis thaliana

brachypodium distachyon

brassica napus

brassica oleracea

brassica rapa

chlamydomonas reinhardtii

glycine max

hordeum vulgare

medicago truncatula

musa acuminata

oryza sativa

physcomitrella patens

populus trichocarpa

prunus persica

solanum lycopersicum

solanum tuberosum

sorghum bicolor

theobroma cacao

triticum aestivum

triticum urartu

vitis vinifera

zea mays